Mercurial > repos > ynewton > extract_tumor_vs_normal_tcga_ids

changeset 1:5240f8985481 draft

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Uploaded
author ynewton
date Thu, 17 Jan 2013 20:08:25 -0500
parents 72b0123a8587
children 82e5ee13fe5a
files get_normal_vs_tumor_sample_ids.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_normal_vs_tumor_sample_ids.xml	Thu Jan 17 20:08:25 2013 -0500
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+<tool id="extract_tumor_vs_normal_ID_lists" name="Extract tumor vs. normal TCGA IDs" version="1.0.0">
+  <description>Extract normal vs. tumor IDs for TCGA samples</description>
+  <command interpreter="python">get_normal_vs_tumor_sample_ids.py --in_matrix $tableData --out_normals $outfile1 --out_tumor $outfile2
+  </command>
+  <inputs>
+	  <param name="tableData" format="tabular" type="data" label="Input data"/>
+  </inputs>
+  <outputs>
+      <data name="outfile1" format="tabular"/>
+      <data name="outfile2" format="tabular"/>
+  </outputs>
+  <help>
+**What it does**
+
+Takes a matrix of TCGA samples and extract two lists: normal sample IDs and tumor sample IDs.
+
+  </help>   
+</tool>
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