Mercurial > repos > yqiancolumbia > ctk_test
annotate bed2rgb.xml @ 0:0475e4175855 draft default tip
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author | yqiancolumbia |
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date | Mon, 30 Apr 2018 05:25:11 -0400 |
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1 <tool id="bed2rgb" name="Add different colors"> |
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2 <description>to different replicates</description> |
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3 <command interpreter="perl"> |
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4 /home/galaxy/tools/CTK/bed2rgb.pl -v -col $color $inputfile $outputfile |
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5 </command> |
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6 <inputs> |
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7 <param name="inputfile" format="bed" type="data" label="Input BED file" /> |
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8 <param name="color" type="text" value="" label="Color by name or RGB (red; green; blue; ...; R,G,B; see help below for more information)" /> |
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9 </inputs> |
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10 <outputs> |
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11 <data name="outputfile" format="bed" label="Add RGB colors on ${on_string}"> |
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12 </data> |
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13 </outputs> |
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14 |
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15 <help> |
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16 |
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17 .. class:: infomark |
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18 |
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19 **What this tool does** |
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20 |
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21 This tool will add different colors to BED files in RGB format. |
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22 |
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23 It will take as input files in BED format of unique CLIP tags and output files in BED format of RGB colored unique CLIP tags. |
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24 |
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25 Repeat the step for all uniq.bed files to generate RGB-bed files, but use different RGB colors "x,x,x" (e.g. 128,0,0). |
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26 See http://www.rapidtables.com/web/color/RGB_Color.htm or other charts. |
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27 |
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28 After getting the unique tags of each library, one might concatenate biological replicates for both BED files and mutation files, which are distinguished by different colors using this tool. |
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29 |
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30 </help> |
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31 </tool> |