diff bed2rgb.xml @ 0:0475e4175855 draft default tip

planemo upload commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bed2rgb.xml	Mon Apr 30 05:25:11 2018 -0400
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+<tool id="bed2rgb" name="Add different colors">
+  <description>to different replicates</description>
+  <command interpreter="perl">
+                    /home/galaxy/tools/CTK/bed2rgb.pl -v -col $color $inputfile $outputfile
+  </command>
+  <inputs>
+        <param name="inputfile" format="bed"  type="data" label="Input BED file" />
+	<param name="color"  type="text" value="" label="Color by name or RGB (red; green; blue; ...; R,G,B; see help below for more information)" />
+  </inputs>
+  <outputs>
+        <data name="outputfile" format="bed" label="Add RGB colors on ${on_string}">
+        </data> 
+  </outputs>
+
+  <help>
+
+.. class:: infomark
+
+**What this tool does**
+
+This tool will add different colors to BED files in RGB format. 
+
+It will take as input files in BED format of unique CLIP tags and output files in BED format of RGB colored unique CLIP tags.
+
+Repeat the step for all uniq.bed files to generate RGB-bed files, but use different RGB colors "x,x,x" (e.g. 128,0,0).
+See http://www.rapidtables.com/web/color/RGB_Color.htm or other charts.
+
+After getting the unique tags of each library, one might concatenate biological replicates for both BED files and mutation files, which are distinguished by different colors using this tool.
+
+  </help>
+</tool>