Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
annotate DiffExpAnal/countNumber.xml @ 6:59cc55f611f6 draft
Uploaded
author | yufei-luo |
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date | Tue, 22 Jan 2013 10:46:42 -0500 |
parents | 63799b789162 |
children |
rev | line source |
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0 | 1 <tool id="countNumber" name="countNumber"> |
2 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description> | |
3 <command interpreter="perl"> countNumber.pl $input $outputCSV | |
4 </command> | |
5 | |
6 <inputs> | |
7 <param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/> | |
8 </inputs> | |
9 | |
10 <outputs> | |
11 <data format="csv" name="outputCSV" label="countNumber Output"/> | |
12 </outputs> | |
13 | |
14 <help> | |
15 </help> | |
16 </tool> |