Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data

annotate DiffExpAnal/countNumber.xml @ 6:59cc55f611f6 draft

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author yufei-luo
date Tue, 22 Jan 2013 10:46:42 -0500
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1 <tool id="countNumber" name="countNumber">
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2 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
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3 <command interpreter="perl"> countNumber.pl $input $outputCSV
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4 </command>
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5
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6 <inputs>
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7 <param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/>
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8 </inputs>
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9
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10 <outputs>
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11 <data format="csv" name="outputCSV" label="countNumber Output"/>
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12 </outputs>
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13
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14 <help>
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15 </help>
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16 </tool>