Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data

diff DiffExpAnal/countNumber.xml @ 0:63799b789162 draft

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author yufei-luo
date Tue, 22 Jan 2013 10:07:03 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DiffExpAnal/countNumber.xml	Tue Jan 22 10:07:03 2013 -0500
@@ -0,0 +1,16 @@
+<tool id="countNumber" name="countNumber">
+	<description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
+	<command interpreter="perl"> countNumber.pl $input $outputCSV
+	</command>
+
+	<inputs>
+		<param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/>		
+	</inputs>
+
+	<outputs>
+		<data format="csv" name="outputCSV" label="countNumber Output"/>
+	</outputs>
+
+	<help>
+	</help>
+</tool>