Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
comparison DiffExpAnal/countNumber.xml @ 0:63799b789162 draft
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| author | yufei-luo |
|---|---|
| date | Tue, 22 Jan 2013 10:07:03 -0500 |
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| -1:000000000000 | 0:63799b789162 |
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| 1 <tool id="countNumber" name="countNumber"> | |
| 2 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description> | |
| 3 <command interpreter="perl"> countNumber.pl $input $outputCSV | |
| 4 </command> | |
| 5 | |
| 6 <inputs> | |
| 7 <param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/> | |
| 8 </inputs> | |
| 9 | |
| 10 <outputs> | |
| 11 <data format="csv" name="outputCSV" label="countNumber Output"/> | |
| 12 </outputs> | |
| 13 | |
| 14 <help> | |
| 15 </help> | |
| 16 </tool> |