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annotate SMART/galaxy/ConvertTranscriptFile_BlastToSam.xml @ 13:03045debed6e

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author m-zytnicki
date Wed, 17 Apr 2013 10:39:35 -0400
parents 769e306b7933
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <tool id="ConvertTranscriptFile_BlastToSam" name="Blast (-m 8) -> Sam">
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2 <description>Convert Blast (-m 8) File to Sam File.</description>
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3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g sam yes 2>$logFile </command>
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4 <inputs>
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5 <param name="inputFile" type="data" label="Input File" format="tabular"/>
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6 </inputs>
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7
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8 <outputs>
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9 <data format="sam" name="outputFile" label="[blast -> sam] Output File"/>
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10 <data format="txt" name="logFile" label="[blast -> sam] Log File"/>
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11 </outputs>
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12
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13 <help>
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14 </help>
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15 </tool>