annotate SMART/Java/Python/100% @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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1
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2 R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
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3 Copyright (C) 2012 The R Foundation for Statistical Computing
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4 ISBN 3-900051-07-0
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5 Platform: x86_64-pc-linux-gnu (64-bit)
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6
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7 R is free software and comes with ABSOLUTELY NO WARRANTY.
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8 You are welcome to redistribute it under certain conditions.
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9 Type 'license()' or 'licence()' for distribution details.
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10
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11 Natural language support but running in an English locale
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12
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13 R is a collaborative project with many contributors.
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14 Type 'contributors()' for more information and
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15 'citation()' on how to cite R or R packages in publications.
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16
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17 Type 'demo()' for some demos, 'help()' for on-line help, or
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18 'help.start()' for an HTML browser interface to help.
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19 Type 'q()' to quit R.
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20
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21 [Previously saved workspace restored]
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22
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23 > library(extrafont)
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24 Registering fonts with R
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25 There were 50 or more warnings (use warnings() to see the first 50)
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26 > loadfonts()
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27 Padauk already registered with pdfFonts().
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28 Padauk Book already registered with pdfFonts().
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29 Abyssinica SIL already registered with pdfFonts().
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30 cmex10 already registered with pdfFonts().
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31 cmmi10 already registered with pdfFonts().
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32 cmr10 already registered with pdfFonts().
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33 cmsy10 already registered with pdfFonts().
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34 DejaVu Sans already registered with pdfFonts().
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35 DejaVu Sans Condensed already registered with pdfFonts().
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36 DejaVu Sans Light already registered with pdfFonts().
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37 DejaVu Sans Mono already registered with pdfFonts().
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38 DejaVu Serif already registered with pdfFonts().
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39 DejaVu Serif Condensed already registered with pdfFonts().
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40 Droid Arabic Naskh already registered with pdfFonts().
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41 Droid Sans already registered with pdfFonts().
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42 Droid Sans Armenian already registered with pdfFonts().
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43 Droid Sans Ethiopic already registered with pdfFonts().
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44 Droid Sans Fallback already registered with pdfFonts().
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45 Droid Sans Georgian already registered with pdfFonts().
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46 Droid Sans Hebrew already registered with pdfFonts().
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47 Droid Sans Mono already registered with pdfFonts().
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48 Droid Sans Thai already registered with pdfFonts().
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49 Droid Serif already registered with pdfFonts().
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50 esint10 already registered with pdfFonts().
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51 eufm10 already registered with pdfFonts().
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52 FreeMono already registered with pdfFonts().
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53 FreeSans already registered with pdfFonts().
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54 FreeSerif already registered with pdfFonts().
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55 gargi already registered with pdfFonts().
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56 Garuda already registered with pdfFonts().
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57 Gentium already registered with pdfFonts().
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58 GentiumAlt already registered with pdfFonts().
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59 Gentium Basic already registered with pdfFonts().
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60 Gentium Book Basic already registered with pdfFonts().
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61 Junicode already registered with pdfFonts().
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62 KacstArt already registered with pdfFonts().
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63 KacstBook already registered with pdfFonts().
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64 KacstDecorative already registered with pdfFonts().
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65 KacstDigital already registered with pdfFonts().
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66 KacstFarsi already registered with pdfFonts().
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67 KacstLetter already registered with pdfFonts().
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68 KacstNaskh already registered with pdfFonts().
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69 KacstOffice already registered with pdfFonts().
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70 KacstOne already registered with pdfFonts().
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71 KacstPen already registered with pdfFonts().
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72 KacstPoster already registered with pdfFonts().
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73 KacstQurn already registered with pdfFonts().
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74 KacstScreen already registered with pdfFonts().
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78 Khmer OS already registered with pdfFonts().
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79 Khmer OS System already registered with pdfFonts().
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80 LKLUG already registered with pdfFonts().
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81 Lohit Bengali already registered with pdfFonts().
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82 Lohit Gujarati already registered with pdfFonts().
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83 Lohit Hindi already registered with pdfFonts().
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84 Lohit Punjabi already registered with pdfFonts().
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85 Lohit Tamil already registered with pdfFonts().
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86 Loma already registered with pdfFonts().
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87 Mallige already registered with pdfFonts().
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89 Meera already registered with pdfFonts().
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90 mry_KacstQurn already registered with pdfFonts().
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91 msam10 already registered with pdfFonts().
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92 msbm10 already registered with pdfFonts().
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93 Mukti Narrow already registered with pdfFonts().
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94 NanumGothic already registered with pdfFonts().
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95 NanumMyeongjo already registered with pdfFonts().
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96 OpenSymbol already registered with pdfFonts().
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97 Phetsarath OT already registered with pdfFonts().
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98 Pothana2000 already registered with pdfFonts().
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99 Purisa already registered with pdfFonts().
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105 Tibetan Machine Uni already registered with pdfFonts().
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110 Ubuntu already registered with pdfFonts().
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111 Ubuntu Condensed already registered with pdfFonts().
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115 Ume Gothic C4 already registered with pdfFonts().
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127 Ume UI Gothic O5 already registered with pdfFonts().
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128 UnBatang already registered with pdfFonts().
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129 UnDotum already registered with pdfFonts().
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130 UnGraphic already registered with pdfFonts().
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131 UnGungseo already registered with pdfFonts().
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132 UnPilgi already registered with pdfFonts().
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133 utkal already registered with pdfFonts().
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134 Vemana2000 already registered with pdfFonts().
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135 VL Gothic already registered with pdfFonts().
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136 VL PGothic already registered with pdfFonts().
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137 Waree already registered with pdfFonts().
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138 wasy10 already registered with pdfFonts().
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139 There were 26 warnings (use warnings() to see them)
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140 > library(ggplot2)
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141 > data <- read.table("tmpFile36240.dat", header = T)
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142 > data$Sample <- factor(data$Sample, levels=c("Col", "rtl2", "35S::RTL2#1", "35S::RTL2#2", "35S::RTL1#1", "dcl2dcl3dcl4"))
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143 > data$Size <- factor(data$Size, levels=c(21, 22, 23, 24))
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144 > png("/home/mzytnick/Desktop/Projects/Vaucheret/RTrna/MiRna/genomicSizes.png", width = 1000, height = 200)
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145 > ggplot(data, aes(x = Size, y = Count, fill = Size)) + geom_bar(stat = "identity") + facet_grid(. ~ Sample, space="free_x") + xlab("Sizes") + ylab("Count") + scale_fill_manual(values = c("blue", "green", "pink", "red")) + theme(legend.position = "none", panel.grid.major = element_blank(), panel.grid.minor = element_blank(), panel.background = element_blank())
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146 > dev.off()
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147 null device
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148 1
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149 >
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150 > proc.time()
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151 user system elapsed
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152 1.884 0.088 3.163