annotate SMART/Java/Python/TestFiles/testC2S.fa @ 31:0ab839023fe4

Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1 >chr1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2 CAACATTAGCGCCATGCCCACTGTGGGGAATTTACCAGCAGCCCGCACAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3 TTAGCCGGCCTGCTGCAAAGCGGGATTTATTTAATTCATCCTCCAAGAGC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4 CCAAACGAGCATCCTATGAGTTTCTCGGAAGTGGTAGCTGGAGCAGGTCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5 AGTTTCTATGGCACCCCCTAATCCGGCACCACTGACGAAAACCCCAGGAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6 AGCGGACAAACGACGATCTGGATTGCTCAAATTTTAAGACGCCCAATAAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7 AAATTATGCGCGACATCCAATTTTGTAACTCCCTGCATTTTTCCCCCGCT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8 CATCACACCAGTTTTCAAAAGCAAGGCAGCTCAATCTGTTTATGAGGAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
9 CAAAAGCCAGAAACGGACCCACCCGCCAGCCGTTACCCTGTAGCATCAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10 GTCTCTGCTTGCAGCGCAGCGGCGCCACCCGTTATCGCCCCCCTACCCCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11 TCAAAATACAGATGCACAGCTGCCTCCATGGAAAATCGTGCCCCAGAGCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12 GTAGAGCACCCCCTATACTCGTCAATGATGTGAAGGAAATTGTCCCTCTC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13 CTGGAAAAGCTAAATTATACAGCAGGAGTATCCAGCTACACCACCAGAGC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14 AATAGAAGGAAACGGGGTCAGGATCCAGGCCAAGGATATGACCGCCTACA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15 ACAAAATTAAAGAAGTCCTGGTGGCCAACGGATTTCCTTTATTCACCAAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16 CAGCCCAAGTCTGAGAGAGGCTTCCGAGTCATCATCAGACACCTCCATCA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
17 TTCCACACCATGCTCGTGGATAGTCGAGGAGCTGCTGAAGCTCGGTCTCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
18 AAGCGCGCTTCGTCAGAAACATGACGAATCCAGCTACAGGTGGCCCCATG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
19 CGAATGTTTGAAGTGGAGATCGTCATGGCCAAAGATGGCAGCCACGATAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
20 AATTCTCTCACTCAAACAAATCGGTGGGCAAAAGGTGGATATTGAAAGGA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
21 AAAATAGGACACAGGAGCCGGTTCAGTGCTACAGATGCCAGGGCTTCAGA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
22 CATGCCAAAAATTCATGCATGAGGACGCCTAAATGCATGAAATGCGCTGG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
23 CGATCACCTGTCATCCTGCTGCACCAAGCCAAAATCCACCCCCGCCACCT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
24 GCATCAACTGCTCTGGGGAACATATCAGCGCTTATAAAGGATGCCCCGCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
25 TACAAGGCCGAAAAACGAAAGCTGGCGGCTAACATTATTGACACAAACAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
26 AATAAGGACAATCAAAGACGCAACTAATCACTTTTATAAACGACAAGGCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
27 CCCCTCCACGTAATAATACCCCTCGACTACCGCACAGCTCAGCAATCCTG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
28 ACCAAGTCAATCGCTGAAGCTCGCCAGGAAGCCGCCAAAAAGTCGATGCT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
29 AAATCCTTATTGGCAAAGCTCGAACGACAGAAGGCCACGTTTCTCCTCCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
30 ATGACACTGCCATTCAAAAACGGCTAAACAAATGGCGCCGAAACTCTAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
31 AAGATACCCAAAAAGGGTAGGATATCCTCAAAGGACAATGCAAAGCCAAG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
32 ACCGGCATCCAAGACAAGCAACCCAGCGCAAAGACATCTGGAAAAATACC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
33 AGGACATGCTCCGAAACGAAAGGAGTGAAGAAATTGACCATGAACCTGAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
34 AAAGGTACTCCTAATCCCAGCCGAGTCGGCAACGACAGCCCTCCGACCAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
35 CAGCAGAGCCGCCAGAGCTAACTTTAAGCCAAGAATTATCGATGAAGCTA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
36 CGCCATCGCCAAGAAACTCCAATCCTTACCTACAGAAGAGCTTCTCGGAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
37 GACCCCACCATTAATCTAGCTAATAGAGTCGATAATTTAGAAAAGAAAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
38 TGACATTTTAATGGCTTTAATCATACAAGGAACCAATAACAATAATCTTG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
39 ACATTGATACATCAATCTAAATTTACATTACACTTATTTATATTTATACC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
40 TATTATAAATATATATATCCGACACAAAAGCGCACGTCTGCCCACCCTTA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
41 TAATGTTCTAATTATTATCACCTTCCTCGACGCAAAGCTTAAACCTCTGT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
42 TGAAAAACAAATCAATTAGATGGATGACATAAAAACGTAAATAAATAATC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
43 TTCTCACCTCAAGCATCCGGATAAAAAAGGCAATACGCACTCCAACTCCT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
44 GATGAAGCTATGTGAAGAAAACTACACCAGGATTCAAAAGTCGAATCGGA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
45 GGATGGACATGAGAAGAATCTGTGCGGCAGAAGCATGATGAATAGAGGCG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
46 ACTCGCTGCAGCAAAATATGCACTACGCCACTTACCTGAATCTTCTGCGG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
47 CGCAGTCTTTTTATGTACCATCATCTCCGCCGCAACCGCTTCACACAGCT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
48 CCACAACATAAGATGCGCCACCAAAGCTGCCTCCGTACTGAACTGGACAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
49 CATGCGTTGCGCTGCAAATCCTATCCTATTGACGAGCGCCAACAGCGGGT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
50 CTGCGCTAAAAACCTAAAAACAAAACAAAACAAAACAATTAATCAACAAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
51 AAATTGAACATAACAATCAAACAATAACAATCACTTACCTCCTTGACTGC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
52 ATCCAATCGCTGACCCAAATCCAACACAACCGACAACAGGAGACGGGCTT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
53 CGCAAATGCAAAACAAAATCGCCAACTTTTGCGATTATAAATACAAAAAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
54 TTGACAATTTTCTGATGCCATCTCCATCCTTTGATCCCACTGCCCAAATA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
55 AGGATCATTAGCGCGGAGCTGAAGCCACATTAATAAGCTGTAAAATTGAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
56 CCCCAAAATGTATATTTCTCCTCAATACCGTATCTTCAACGAACTTTCCG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
57 CCAACCTGCAATGAAAGGGAAATTAATAATAATGCTATACAGAATTAATC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
58 AGCGACACATAGAAAATAGCAAACCAGACAGGCAAAGTAGTAGATGCAAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
59 CAGGCGACTCCATCCCGCCGACGACAAGCATTCAAATCCTTCATACTGAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
60 ACAAGGAAGCACAAGCCAATACTGGGAATTATTTACTCAAACAAAATACT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
61 TATCTAATTACCAACTCGACGACTCCAAATACGCGGCACACCGGCTGCGA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
62 TAGCTCTTAAATAAAGGGCCTCCTAATTAACTACAAAACGTACCTGAAAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
63 ATAAAACAATTAACGCAATCGTAAATAATTACAATTATAATACTCACCTC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
64 CAGATTAGCCTAATGTACCTGAAAAACAAAAACAAAAATTAATGCAATAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
65 TTATAAAAACAAATAAATACAAACACAATACTTACCTCCAAATTACCTCC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
66 CAGCCAAAGCACCTGAAATACAAAAACAAAGAATTAATGCAATAAATAAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
67 TCAAATAAATACAAATACAATACTCACCCCAAATAACCTCCCAGCTAATT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
68 TACCTGAAAAAACAAAAATTAATACAATATTAAAAACGAATAACAAATGT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
69 AATACTTACCAAATTTTAACTTTGTATTCATTTCCATGGCCCAAATCGTT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
70 GCGACGGTCCTCGGCAACAAATCATGTTCCGGCGGCTCCTAGCTGCCAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
71 CCCGACGCATTGGCCACAAGACGCGGCGCTCCTGGCAACTCTCGATGAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
72 AACCGAGCTCCAATTTCCACGACGACTCTTCTGCCAAACGAGTCAGATTA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
73 CACCAACATAATGCCAGCAGCTCCCAAACAATGCAATGACGGCTGCGCGG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
74 GATCCATCTTCAGATTTTCTTCTTCCTGACGACCGGCTAAGCTGCCCTGC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
75 AATTTAAGAAATTTTATTAAACAATTGCAAATATCTACCACTGAGGGTGG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
76 TAGAGACAACCACCAAATGACAGCGGCGCGGGATACACCCACCACGAATA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
77 GGCTTTCTGCAGCGCTGGCCGGACATGCATGTTGCGACGCGCATTCAGCG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
78 TCCACAACAAGCCCCAGCCAGAATACAACAAACACTCACCTGCAATGTTT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
79 CCTGAGGCTTCCAGCGACTCGGTGCTTCCGTCCTTCTGGCGGGGGTACCT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
80 GAAAAGAATTAATTCAAATTATGTTAGTCTTAAATTCCAATGTTTCTTGT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
81 TAAATAATTCAAATTATCAAATGTAAACATAACATACAATGTGATAATGT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
82 TACCAGTCCATGTTACTGCCAAAAACCTAAGTTTACAAAAAAATACTTAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
83 CTCTTAATATTAATACTAAATCTATGTCCAATCCCCAAACTCACCCCACG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
84 TAATGTACACCTCAAAAATTCAAATAATTGTACCTACATATTGCATTCTA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
85 TGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTCATTCTGT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
86 CTCCGTACCTCCACCAGCAAAGTTAAAAATGAAATATCCCTCATCACCGC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
87 TGCAATCTACATACATGGATACAGCGCAAAAGACGGTCAACCACGTCGTC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
88 TCCGAGTCGTTCAGGACACCTTGCTGCTCTCAATAACCTCCAGCCTGACG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
89 AGCGCCAACAGCGAGTTGACGCTAAAACCTAAAAACAAACAACAACAAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
90 TAAATACAAACAAATAAAATAAAATCAAACAAAACACTTACTTCACTGAC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
91 AACAGCCAATTGCTGATCCACATTCAACGCAACAGACAACAGGAGACGGG
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
92 CCCCGCAAACGCAAAACAAAATCGCCAATTTTTGCGATTTTAAATACAAA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
93 AAATCGACAATTTTACTAAGCCCTCTCCATCTCCTGATGCCACCGCCACA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
94 ATAAGGATCACTAGCGCGGCGCTGATGCCACATCAATAAACCGCAATATT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
95 TGTCCTCAAAACGTATACTTCTTCTCAGTATCGCAACTTCTACGAATTTC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
96 CCGCTAACCTACAATGAAAGGAAAATCAATAAGAATGTGATACAAAAAAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
97 TAATCAAGGGCAAATAGAAAATAGCTTACCGGACAGGCATACTAGCAGAT
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
98 GCTAATATGCAACTCCATCCTTCTGAGACAAATACGCAACTCCTTTTTTC
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
99 CAAGATTGCAAATACTGAAACAAGGAAGCACAAGCCAATACTGGGAATTA
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
100 TTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATC