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annotate SMART/Java/Python/TestFiles/testC2S.fa @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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18
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1 >chr1
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2 CAACATTAGCGCCATGCCCACTGTGGGGAATTTACCAGCAGCCCGCACAC
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3 TTAGCCGGCCTGCTGCAAAGCGGGATTTATTTAATTCATCCTCCAAGAGC
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4 CCAAACGAGCATCCTATGAGTTTCTCGGAAGTGGTAGCTGGAGCAGGTCC
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5 AGTTTCTATGGCACCCCCTAATCCGGCACCACTGACGAAAACCCCAGGAA
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6 AGCGGACAAACGACGATCTGGATTGCTCAAATTTTAAGACGCCCAATAAA
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7 AAATTATGCGCGACATCCAATTTTGTAACTCCCTGCATTTTTCCCCCGCT
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8 CATCACACCAGTTTTCAAAAGCAAGGCAGCTCAATCTGTTTATGAGGAAT
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9 CAAAAGCCAGAAACGGACCCACCCGCCAGCCGTTACCCTGTAGCATCAAT
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10 GTCTCTGCTTGCAGCGCAGCGGCGCCACCCGTTATCGCCCCCCTACCCCC
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11 TCAAAATACAGATGCACAGCTGCCTCCATGGAAAATCGTGCCCCAGAGCC
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12 GTAGAGCACCCCCTATACTCGTCAATGATGTGAAGGAAATTGTCCCTCTC
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13 CTGGAAAAGCTAAATTATACAGCAGGAGTATCCAGCTACACCACCAGAGC
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14 AATAGAAGGAAACGGGGTCAGGATCCAGGCCAAGGATATGACCGCCTACA
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15 ACAAAATTAAAGAAGTCCTGGTGGCCAACGGATTTCCTTTATTCACCAAC
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16 CAGCCCAAGTCTGAGAGAGGCTTCCGAGTCATCATCAGACACCTCCATCA
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17 TTCCACACCATGCTCGTGGATAGTCGAGGAGCTGCTGAAGCTCGGTCTCC
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18 AAGCGCGCTTCGTCAGAAACATGACGAATCCAGCTACAGGTGGCCCCATG
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19 CGAATGTTTGAAGTGGAGATCGTCATGGCCAAAGATGGCAGCCACGATAA
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20 AATTCTCTCACTCAAACAAATCGGTGGGCAAAAGGTGGATATTGAAAGGA
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21 AAAATAGGACACAGGAGCCGGTTCAGTGCTACAGATGCCAGGGCTTCAGA
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22 CATGCCAAAAATTCATGCATGAGGACGCCTAAATGCATGAAATGCGCTGG
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23 CGATCACCTGTCATCCTGCTGCACCAAGCCAAAATCCACCCCCGCCACCT
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24 GCATCAACTGCTCTGGGGAACATATCAGCGCTTATAAAGGATGCCCCGCC
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25 TACAAGGCCGAAAAACGAAAGCTGGCGGCTAACATTATTGACACAAACAA
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26 AATAAGGACAATCAAAGACGCAACTAATCACTTTTATAAACGACAAGGCC
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27 CCCCTCCACGTAATAATACCCCTCGACTACCGCACAGCTCAGCAATCCTG
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28 ACCAAGTCAATCGCTGAAGCTCGCCAGGAAGCCGCCAAAAAGTCGATGCT
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29 AAATCCTTATTGGCAAAGCTCGAACGACAGAAGGCCACGTTTCTCCTCCC
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30 ATGACACTGCCATTCAAAAACGGCTAAACAAATGGCGCCGAAACTCTAAT
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31 AAGATACCCAAAAAGGGTAGGATATCCTCAAAGGACAATGCAAAGCCAAG
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32 ACCGGCATCCAAGACAAGCAACCCAGCGCAAAGACATCTGGAAAAATACC
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33 AGGACATGCTCCGAAACGAAAGGAGTGAAGAAATTGACCATGAACCTGAA
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34 AAAGGTACTCCTAATCCCAGCCGAGTCGGCAACGACAGCCCTCCGACCAC
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35 CAGCAGAGCCGCCAGAGCTAACTTTAAGCCAAGAATTATCGATGAAGCTA
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36 CGCCATCGCCAAGAAACTCCAATCCTTACCTACAGAAGAGCTTCTCGGAC
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37 GACCCCACCATTAATCTAGCTAATAGAGTCGATAATTTAGAAAAGAAAAT
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38 TGACATTTTAATGGCTTTAATCATACAAGGAACCAATAACAATAATCTTG
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39 ACATTGATACATCAATCTAAATTTACATTACACTTATTTATATTTATACC
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40 TATTATAAATATATATATCCGACACAAAAGCGCACGTCTGCCCACCCTTA
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41 TAATGTTCTAATTATTATCACCTTCCTCGACGCAAAGCTTAAACCTCTGT
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42 TGAAAAACAAATCAATTAGATGGATGACATAAAAACGTAAATAAATAATC
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43 TTCTCACCTCAAGCATCCGGATAAAAAAGGCAATACGCACTCCAACTCCT
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44 GATGAAGCTATGTGAAGAAAACTACACCAGGATTCAAAAGTCGAATCGGA
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45 GGATGGACATGAGAAGAATCTGTGCGGCAGAAGCATGATGAATAGAGGCG
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46 ACTCGCTGCAGCAAAATATGCACTACGCCACTTACCTGAATCTTCTGCGG
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47 CGCAGTCTTTTTATGTACCATCATCTCCGCCGCAACCGCTTCACACAGCT
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48 CCACAACATAAGATGCGCCACCAAAGCTGCCTCCGTACTGAACTGGACAT
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49 CATGCGTTGCGCTGCAAATCCTATCCTATTGACGAGCGCCAACAGCGGGT
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50 CTGCGCTAAAAACCTAAAAACAAAACAAAACAAAACAATTAATCAACAAC
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51 AAATTGAACATAACAATCAAACAATAACAATCACTTACCTCCTTGACTGC
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52 ATCCAATCGCTGACCCAAATCCAACACAACCGACAACAGGAGACGGGCTT
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53 CGCAAATGCAAAACAAAATCGCCAACTTTTGCGATTATAAATACAAAAAA
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54 TTGACAATTTTCTGATGCCATCTCCATCCTTTGATCCCACTGCCCAAATA
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55 AGGATCATTAGCGCGGAGCTGAAGCCACATTAATAAGCTGTAAAATTGAT
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56 CCCCAAAATGTATATTTCTCCTCAATACCGTATCTTCAACGAACTTTCCG
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57 CCAACCTGCAATGAAAGGGAAATTAATAATAATGCTATACAGAATTAATC
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58 AGCGACACATAGAAAATAGCAAACCAGACAGGCAAAGTAGTAGATGCAAA
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59 CAGGCGACTCCATCCCGCCGACGACAAGCATTCAAATCCTTCATACTGAA
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60 ACAAGGAAGCACAAGCCAATACTGGGAATTATTTACTCAAACAAAATACT
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61 TATCTAATTACCAACTCGACGACTCCAAATACGCGGCACACCGGCTGCGA
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62 TAGCTCTTAAATAAAGGGCCTCCTAATTAACTACAAAACGTACCTGAAAA
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63 ATAAAACAATTAACGCAATCGTAAATAATTACAATTATAATACTCACCTC
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64 CAGATTAGCCTAATGTACCTGAAAAACAAAAACAAAAATTAATGCAATAA
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65 TTATAAAAACAAATAAATACAAACACAATACTTACCTCCAAATTACCTCC
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66 CAGCCAAAGCACCTGAAATACAAAAACAAAGAATTAATGCAATAAATAAA
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67 TCAAATAAATACAAATACAATACTCACCCCAAATAACCTCCCAGCTAATT
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68 TACCTGAAAAAACAAAAATTAATACAATATTAAAAACGAATAACAAATGT
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69 AATACTTACCAAATTTTAACTTTGTATTCATTTCCATGGCCCAAATCGTT
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70 GCGACGGTCCTCGGCAACAAATCATGTTCCGGCGGCTCCTAGCTGCCAAT
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71 CCCGACGCATTGGCCACAAGACGCGGCGCTCCTGGCAACTCTCGATGAAT
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72 AACCGAGCTCCAATTTCCACGACGACTCTTCTGCCAAACGAGTCAGATTA
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73 CACCAACATAATGCCAGCAGCTCCCAAACAATGCAATGACGGCTGCGCGG
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74 GATCCATCTTCAGATTTTCTTCTTCCTGACGACCGGCTAAGCTGCCCTGC
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75 AATTTAAGAAATTTTATTAAACAATTGCAAATATCTACCACTGAGGGTGG
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76 TAGAGACAACCACCAAATGACAGCGGCGCGGGATACACCCACCACGAATA
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77 GGCTTTCTGCAGCGCTGGCCGGACATGCATGTTGCGACGCGCATTCAGCG
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78 TCCACAACAAGCCCCAGCCAGAATACAACAAACACTCACCTGCAATGTTT
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79 CCTGAGGCTTCCAGCGACTCGGTGCTTCCGTCCTTCTGGCGGGGGTACCT
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80 GAAAAGAATTAATTCAAATTATGTTAGTCTTAAATTCCAATGTTTCTTGT
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81 TAAATAATTCAAATTATCAAATGTAAACATAACATACAATGTGATAATGT
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82 TACCAGTCCATGTTACTGCCAAAAACCTAAGTTTACAAAAAAATACTTAC
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83 CTCTTAATATTAATACTAAATCTATGTCCAATCCCCAAACTCACCCCACG
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84 TAATGTACACCTCAAAAATTCAAATAATTGTACCTACATATTGCATTCTA
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85 TGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTCATTCTGT
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86 CTCCGTACCTCCACCAGCAAAGTTAAAAATGAAATATCCCTCATCACCGC
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87 TGCAATCTACATACATGGATACAGCGCAAAAGACGGTCAACCACGTCGTC
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88 TCCGAGTCGTTCAGGACACCTTGCTGCTCTCAATAACCTCCAGCCTGACG
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89 AGCGCCAACAGCGAGTTGACGCTAAAACCTAAAAACAAACAACAACAAAT
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90 TAAATACAAACAAATAAAATAAAATCAAACAAAACACTTACTTCACTGAC
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91 AACAGCCAATTGCTGATCCACATTCAACGCAACAGACAACAGGAGACGGG
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92 CCCCGCAAACGCAAAACAAAATCGCCAATTTTTGCGATTTTAAATACAAA
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93 AAATCGACAATTTTACTAAGCCCTCTCCATCTCCTGATGCCACCGCCACA
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94 ATAAGGATCACTAGCGCGGCGCTGATGCCACATCAATAAACCGCAATATT
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95 TGTCCTCAAAACGTATACTTCTTCTCAGTATCGCAACTTCTACGAATTTC
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96 CCGCTAACCTACAATGAAAGGAAAATCAATAAGAATGTGATACAAAAAAT
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97 TAATCAAGGGCAAATAGAAAATAGCTTACCGGACAGGCATACTAGCAGAT
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98 GCTAATATGCAACTCCATCCTTCTGAGACAAATACGCAACTCCTTTTTTC
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99 CAAGATTGCAAATACTGAAACAAGGAAGCACAAGCCAATACTGGGAATTA
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100 TTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATC