Mercurial > repos > yufei-luo > s_mart
annotate SMART/galaxy/ConvertTranscriptFile_SamToGff3.xml @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 769e306b7933 |
children |
rev | line source |
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6 | 1 <tool id="ConvertTranscriptFile_SamToGff3" name="Sam -> Gff3"> |
2 <description>Convert Sam File to Gff3 File.</description> | |
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g gff3 yes 2>$logFile </command> | |
4 <inputs> | |
5 <param name="inputFile" type="data" label="Input File" format="sam"/> | |
6 </inputs> | |
7 | |
8 <outputs> | |
9 <data format="gff3" name="outputFile" label="[sam -> gff3] Output File"/> | |
10 <data format="txt" name="logFile" label="[sam -> gff3] Log File"/> | |
11 </outputs> | |
12 | |
13 <help> | |
14 </help> | |
15 </tool> |