Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/ConvertTranscriptFile_SamToGff3.xml @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 769e306b7933 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/galaxy/ConvertTranscriptFile_SamToGff3.xml Tue Apr 30 14:33:21 2013 -0400 @@ -0,0 +1,15 @@ +<tool id="ConvertTranscriptFile_SamToGff3" name="Sam -> Gff3"> + <description>Convert Sam File to Gff3 File.</description> + <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g gff3 yes 2>$logFile </command> + <inputs> + <param name="inputFile" type="data" label="Input File" format="sam"/> + </inputs> + + <outputs> + <data format="gff3" name="outputFile" label="[sam -> gff3] Output File"/> + <data format="txt" name="logFile" label="[sam -> gff3] Log File"/> + </outputs> + + <help> + </help> +</tool>