18
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1 [db_config]
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2 user: oinizan
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3 host: pisano
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4 passwd: oinizan
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5 dbname:repet_oinizan
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6
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7 [profil_search]
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8 Evalue: 10
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9 InputFormat: FASTA
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10 ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms
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11
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12 [hmmer_config]
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13 output_file: ./datas/hmmpfam_output
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14 result_dir: /home/oinizan/repet_integration/repet_results
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15 query_dir: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/batches
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16 tmp_dir: /home/oinizan/repet_integration/repet_tmp
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17
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18 [sge_config]
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19 queue: main.q
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20 groupid: fake
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21
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22 [parse_config]
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23 scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py
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24
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25 [dbSplit_config]
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26 input_file: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/test_input_aa.fa
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27
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28 [hmmpfam2align_config]
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29 output_file: ./datas/hmmpfam_outputNotInParallel.align
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