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1 import unittest
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2 import os
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3 from commons.core.utils.FileUtils import FileUtils
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4
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5 class Test_F_ProfilesDB4Repet(unittest.TestCase):
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6
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7 def setUp(self):
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8 self._inputDBFile = "%s/Tools/ProfilesDB4Repet_v2.hmm" % os.environ["REPET_DATA"]
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9 self._outputDBFile = "output.hmm"
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10
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11 def tearDown(self):
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12 os.remove(self._outputDBFile)
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13
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14 def test_run_as_script(self):
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15 cmd = "python ../ProfilesDB4Repet.py -i " + self._inputDBFile + " -o " + self._outputDBFile
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16 os.system(cmd)
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17 self.assertEqual(FileUtils.getNbLinesInSingleFile(self._outputDBFile), 375854)
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18
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19 if __name__ == "__main__":
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20 unittest.main()
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