|
18
|
1 <tool id="countNumber_parallel" name="countNumber (for DEA)">
|
|
|
2
|
|
|
3 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
|
|
|
4 <command interpreter="python"> countNumber_parallel.py -i $inputTxt -o $outputTxt $tar $outputTarFile
|
|
|
5 </command>
|
|
|
6
|
|
|
7 <inputs>
|
|
|
8 <param name="inputTxt" type="data" format="txt" label="Please choose your txt format file (which contains a list of gff3 overlapping results files)."/>
|
|
|
9 <param name="tar" type="boolean" truevalue="-t" falsevalue="" checked="False" label="tar option" help="This option creates a tar file for all out results" />
|
|
|
10 </inputs>
|
|
|
11
|
|
|
12 <outputs>
|
|
|
13 <data format="txt" name="outputTxt" label="countNumber Output"/>
|
|
|
14 <data name="outputTarFile" format="tar">
|
|
|
15 <filter>tar</filter>
|
|
|
16 </data>
|
|
|
17 </outputs>
|
|
|
18
|
|
|
19 </tool>
|
