Mercurial > repos > yufei-luo > s_mart

annotate SMART/DiffExpAnal/countNumber_parallel.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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1 <tool id="countNumber_parallel" name="countNumber (for DEA)">
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2
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3 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
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4 <command interpreter="python"> countNumber_parallel.py -i $inputTxt -o $outputTxt $tar $outputTarFile
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5 </command>
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6
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7 <inputs>
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8 <param name="inputTxt" type="data" format="txt" label="Please choose your txt format file (which contains a list of gff3 overlapping results files)."/>
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9 <param name="tar" type="boolean" truevalue="-t" falsevalue="" checked="False" label="tar option" help="This option creates a tar file for all out results" />
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10 </inputs>
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12 <outputs>
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13 <data format="txt" name="outputTxt" label="countNumber Output"/>
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14 <data name="outputTarFile" format="tar">
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15 <filter>tar</filter>
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16 </data>
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17 </outputs>
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19 </tool>