annotate SMART/galaxy/removeExonLines.xml @ 18:94ab73e8a190

Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 769e306b7933
children 0ab839023fe4
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 <tool id="removeExonLines" name="remove exon lines">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 <description>Removes the lines containing Exon.</description>
18
94ab73e8a190 Uploaded
m-zytnicki
parents: 6
diff changeset
3 <requirements>
94ab73e8a190 Uploaded
m-zytnicki
parents: 6
diff changeset
4 <requirement type="set_environment">PYTHONPATH</requirement>
94ab73e8a190 Uploaded
m-zytnicki
parents: 6
diff changeset
5 </requirements>
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile </command>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7 <inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 <param name="inputFile" type="data" label="Input File" format="gff3"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 </inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11 <outputs>
18
94ab73e8a190 Uploaded
m-zytnicki
parents: 6
diff changeset
12 <data format="gff3" name="outputFile" label="[remove exon line] output file"/>
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 </outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 <help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
16 command example: sh removeExonLines.sh input.gff3
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
17 </help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
18 </tool>