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annotate commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutput @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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18
94ab73e8a190 Uploaded
m-zytnicki
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1 # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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m-zytnicki
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2 # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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m-zytnicki
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3 #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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4 DNA_pol_B_2 PF03175.5 531 Polinton-1_DY:classII:Polinton_1 - 4927 3.7e-06 24.2 16.0 1 3 1.4e-09 3.7e-06 24.2 11.1 13 252 992 1214 987 1218 0.76 DNA polymerase type B, organellar and viral
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m-zytnicki
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5 DNA_pol_B_2 PF03175.5 531 Polinton-1_DY:classII:Polinton_1 - 4927 3.7e-06 24.2 16.0 2 3 0.11 2.9e+02 -2.0 0.2 393 433 1367 1397 1364 1398 0.85 DNA polymerase type B, organellar and viral
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6 DNA_pol_B_2 PF03175.5 531 Polinton-1_DY:classII:Polinton_1 - 4927 3.7e-06 24.2 16.0 3 3 0.33 8.5e+02 -3.5 0.2 175 193 2832 2850 2827 2852 0.85 DNA polymerase type B, organellar and viral
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7 ASFV_p27 PF06556.3 131 Polinton-1_DY:classII:Polinton_1 - 4927 2.4 5.8 1.6 1 1 0.0023 6 4.5 1.1 59 74 2633 2648 2626 2652 0.90 IAP-like protein p27 C-terminus
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8 Ribosomal_S4 PF00163.11 110 Polinton-1_DY:classII:Polinton_1 - 4927 5.5 5.7 1.1 1 1 0.0068 18 4.1 0.7 39 72 3008 3041 3002 3043 0.92 Ribosomal protein S4/S9 N-terminal domain
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m-zytnicki
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9 Homo_sperm_syn PF06408.3 487 Polinton-1_DY:classII:Polinton_1 - 4927 6.3 2.4 0.3 1 1 0.0034 8.8 2.0 0.2 49 68 3966 3985 3960 3987 0.88 Homospermidine synthase
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10 rve PF00665.18 169 Polinton-1_DY:classII:Polinton_4 - 4927 5.4e-30 103.7 1.8 1 2 0.7 2.4e+03 -3.3 0.0 50 78 2742 2766 2739 2766 0.80 Integrase core domain
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11 rve PF00665.18 169 Polinton-1_DY:classII:Polinton_4 - 4927 5.4e-30 103.7 1.8 2 2 1.9e-33 6.7e-30 103.4 0.7 4 168 2951 3101 2947 3102 0.92 Integrase core domain
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12 Chromo PF00385.16 69 Polinton-1_DY:classII:Polinton_4 - 4927 3.3e-06 26.0 0.0 1 1 2.5e-09 8.5e-06 24.7 0.0 4 51 3198 3228 3195 3239 0.75 'chromo' (CHRromatin Organisation MOdifier) domain
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m-zytnicki
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13 GARS_A PF01071.11 208 Polinton-1_DY:classII:Polinton_4 - 4927 7.6 3.0 0.7 1 1 0.0031 11 2.5 0.5 196 204 2117 2125 2117 2125 0.95 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain