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     2 R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
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     3 Copyright (C) 2012 The R Foundation for Statistical Computing
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     4 ISBN 3-900051-07-0
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     5 Platform: x86_64-pc-linux-gnu (64-bit)
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     6 
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     7 R is free software and comes with ABSOLUTELY NO WARRANTY.
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     8 You are welcome to redistribute it under certain conditions.
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     9 Type 'license()' or 'licence()' for distribution details.
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    10 
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    11   Natural language support but running in an English locale
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    12 
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    13 R is a collaborative project with many contributors.
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    14 Type 'contributors()' for more information and
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    15 'citation()' on how to cite R or R packages in publications.
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    16 
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    17 Type 'demo()' for some demos, 'help()' for on-line help, or
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    18 'help.start()' for an HTML browser interface to help.
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    19 Type 'q()' to quit R.
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    20 
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    21 [Previously saved workspace restored]
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    22 
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    23 > library(extrafont)
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    24 Registering fonts with R
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    25 There were 50 or more warnings (use warnings() to see the first 50)
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    26 > loadfonts()
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    27 Padauk already registered with pdfFonts().
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    28 Padauk Book already registered with pdfFonts().
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    29 Abyssinica SIL already registered with pdfFonts().
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    30 cmex10 already registered with pdfFonts().
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    31 cmmi10 already registered with pdfFonts().
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    32 cmr10 already registered with pdfFonts().
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    33 cmsy10 already registered with pdfFonts().
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    34 DejaVu Sans already registered with pdfFonts().
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    35 DejaVu Sans Condensed already registered with pdfFonts().
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    36 DejaVu Sans Light already registered with pdfFonts().
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    37 DejaVu Sans Mono already registered with pdfFonts().
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    38 DejaVu Serif already registered with pdfFonts().
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    39 DejaVu Serif Condensed already registered with pdfFonts().
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    40 Droid Arabic Naskh already registered with pdfFonts().
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    41 Droid Sans already registered with pdfFonts().
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    42 Droid Sans Armenian already registered with pdfFonts().
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    43 Droid Sans Ethiopic already registered with pdfFonts().
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    44 Droid Sans Fallback already registered with pdfFonts().
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    45 Droid Sans Georgian already registered with pdfFonts().
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    46 Droid Sans Hebrew already registered with pdfFonts().
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    47 Droid Sans Mono already registered with pdfFonts().
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    48 Droid Sans Thai already registered with pdfFonts().
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    49 Droid Serif already registered with pdfFonts().
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    50 esint10 already registered with pdfFonts().
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    51 eufm10 already registered with pdfFonts().
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    52 FreeMono already registered with pdfFonts().
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    53 FreeSans already registered with pdfFonts().
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    54 FreeSerif already registered with pdfFonts().
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    55 gargi already registered with pdfFonts().
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    56 Garuda already registered with pdfFonts().
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    57 Gentium already registered with pdfFonts().
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    58 GentiumAlt already registered with pdfFonts().
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    59 Gentium Basic already registered with pdfFonts().
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    60 Gentium Book Basic already registered with pdfFonts().
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    61 Junicode already registered with pdfFonts().
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    62 KacstArt already registered with pdfFonts().
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    63 KacstBook already registered with pdfFonts().
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    64 KacstDecorative already registered with pdfFonts().
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    65 KacstDigital already registered with pdfFonts().
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    66 KacstFarsi already registered with pdfFonts().
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    67 KacstLetter already registered with pdfFonts().
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    68 KacstNaskh already registered with pdfFonts().
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    69 KacstOffice already registered with pdfFonts().
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    70 KacstOne already registered with pdfFonts().
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    71 KacstPen already registered with pdfFonts().
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    72 KacstPoster already registered with pdfFonts().
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    73 KacstQurn already registered with pdfFonts().
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    74 KacstScreen already registered with pdfFonts().
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    75 KacstTitle already registered with pdfFonts().
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    76 KacstTitleL already registered with pdfFonts().
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    77 Kedage already registered with pdfFonts().
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    78 Khmer OS already registered with pdfFonts().
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    79 Khmer OS System already registered with pdfFonts().
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    80 LKLUG already registered with pdfFonts().
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    81 Lohit Bengali already registered with pdfFonts().
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    82 Lohit Gujarati already registered with pdfFonts().
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    83 Lohit Hindi already registered with pdfFonts().
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    84 Lohit Punjabi already registered with pdfFonts().
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    85 Lohit Tamil already registered with pdfFonts().
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    86 Loma already registered with pdfFonts().
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    87 Mallige already registered with pdfFonts().
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    88 MarVoSym already registered with pdfFonts().
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    89 Meera already registered with pdfFonts().
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    90 mry_KacstQurn already registered with pdfFonts().
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    91 msam10 already registered with pdfFonts().
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    92 msbm10 already registered with pdfFonts().
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    93 Mukti Narrow already registered with pdfFonts().
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    94 NanumGothic already registered with pdfFonts().
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    95 NanumMyeongjo already registered with pdfFonts().
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    96 OpenSymbol already registered with pdfFonts().
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    97 Phetsarath OT already registered with pdfFonts().
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    98 Pothana2000 already registered with pdfFonts().
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    99 Purisa already registered with pdfFonts().
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   100 Rachana already registered with pdfFonts().
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   101 Rekha already registered with pdfFonts().
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   102 rsfs10 already registered with pdfFonts().
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   103 Saab already registered with pdfFonts().
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   104 Sawasdee already registered with pdfFonts().
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   105 Tibetan Machine Uni already registered with pdfFonts().
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   106 TlwgMono already registered with pdfFonts().
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   107 TlwgTypewriter already registered with pdfFonts().
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   108 Tlwg Typist already registered with pdfFonts().
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   109 Tlwg Typo already registered with pdfFonts().
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   110 Ubuntu already registered with pdfFonts().
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   111 Ubuntu Condensed already registered with pdfFonts().
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   112 Ubuntu Light already registered with pdfFonts().
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   113 Ubuntu Mono already registered with pdfFonts().
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   114 Ume Gothic already registered with pdfFonts().
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   115 Ume Gothic C4 already registered with pdfFonts().
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   116 Ume Gothic C5 already registered with pdfFonts().
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   117 Ume Gothic O5 already registered with pdfFonts().
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   118 Ume Gothic S4 already registered with pdfFonts().
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   119 Ume Gothic S5 already registered with pdfFonts().
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   120 Ume P Gothic already registered with pdfFonts().
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   121 Ume P Gothic C4 already registered with pdfFonts().
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   122 Ume P Gothic C5 already registered with pdfFonts().
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   123 Ume P Gothic O5 already registered with pdfFonts().
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   124 Ume P Gothic S4 already registered with pdfFonts().
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   125 Ume P Gothic S5 already registered with pdfFonts().
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   126 Ume UI Gothic already registered with pdfFonts().
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   127 Ume UI Gothic O5 already registered with pdfFonts().
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   128 UnBatang already registered with pdfFonts().
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   129 UnDotum already registered with pdfFonts().
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   130 UnGraphic already registered with pdfFonts().
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   131 UnGungseo already registered with pdfFonts().
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   132 UnPilgi already registered with pdfFonts().
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   133 utkal already registered with pdfFonts().
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   134 Vemana2000 already registered with pdfFonts().
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   135 VL Gothic already registered with pdfFonts().
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   136 VL PGothic already registered with pdfFonts().
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   137 Waree already registered with pdfFonts().
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   138 wasy10 already registered with pdfFonts().
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   139 There were 26 warnings (use warnings() to see them)
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   140 > library(ggplot2)
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   141 > data <- read.table("tmpFile36240.dat", header = T)
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   142 > data$Sample <- factor(data$Sample, levels=c("Col", "rtl2", "35S::RTL2#1", "35S::RTL2#2", "35S::RTL1#1", "dcl2dcl3dcl4"))
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   143 > data$Size <- factor(data$Size, levels=c(21, 22, 23, 24))
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   144 > png("/home/mzytnick/Desktop/Projects/Vaucheret/RTrna/MiRna/genomicSizes.png", width = 1000, height = 200)
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   145 > ggplot(data, aes(x = Size, y = Count, fill = Size))  + geom_bar(stat = "identity") + facet_grid(. ~ Sample, space="free_x") + xlab("Sizes") + ylab("Count") + scale_fill_manual(values = c("blue", "green", "pink", "red")) + theme(legend.position = "none", panel.grid.major = element_blank(), panel.grid.minor = element_blank(), panel.background = element_blank())
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   146 > dev.off()
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   147 null device 
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   148           1 
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   149 > 
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   150 > proc.time()
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   151    user  system elapsed 
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   152   1.884   0.088   3.163 
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