| 31 | 1 | 
|  | 2 R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" | 
|  | 3 Copyright (C) 2012 The R Foundation for Statistical Computing | 
|  | 4 ISBN 3-900051-07-0 | 
|  | 5 Platform: x86_64-pc-linux-gnu (64-bit) | 
|  | 6 | 
|  | 7 R is free software and comes with ABSOLUTELY NO WARRANTY. | 
|  | 8 You are welcome to redistribute it under certain conditions. | 
|  | 9 Type 'license()' or 'licence()' for distribution details. | 
|  | 10 | 
|  | 11   Natural language support but running in an English locale | 
|  | 12 | 
|  | 13 R is a collaborative project with many contributors. | 
|  | 14 Type 'contributors()' for more information and | 
|  | 15 'citation()' on how to cite R or R packages in publications. | 
|  | 16 | 
|  | 17 Type 'demo()' for some demos, 'help()' for on-line help, or | 
|  | 18 'help.start()' for an HTML browser interface to help. | 
|  | 19 Type 'q()' to quit R. | 
|  | 20 | 
|  | 21 [Previously saved workspace restored] | 
|  | 22 | 
|  | 23 > library(extrafont) | 
|  | 24 Registering fonts with R | 
|  | 25 There were 50 or more warnings (use warnings() to see the first 50) | 
|  | 26 > loadfonts() | 
|  | 27 Padauk already registered with pdfFonts(). | 
|  | 28 Padauk Book already registered with pdfFonts(). | 
|  | 29 Abyssinica SIL already registered with pdfFonts(). | 
|  | 30 cmex10 already registered with pdfFonts(). | 
|  | 31 cmmi10 already registered with pdfFonts(). | 
|  | 32 cmr10 already registered with pdfFonts(). | 
|  | 33 cmsy10 already registered with pdfFonts(). | 
|  | 34 DejaVu Sans already registered with pdfFonts(). | 
|  | 35 DejaVu Sans Condensed already registered with pdfFonts(). | 
|  | 36 DejaVu Sans Light already registered with pdfFonts(). | 
|  | 37 DejaVu Sans Mono already registered with pdfFonts(). | 
|  | 38 DejaVu Serif already registered with pdfFonts(). | 
|  | 39 DejaVu Serif Condensed already registered with pdfFonts(). | 
|  | 40 Droid Arabic Naskh already registered with pdfFonts(). | 
|  | 41 Droid Sans already registered with pdfFonts(). | 
|  | 42 Droid Sans Armenian already registered with pdfFonts(). | 
|  | 43 Droid Sans Ethiopic already registered with pdfFonts(). | 
|  | 44 Droid Sans Fallback already registered with pdfFonts(). | 
|  | 45 Droid Sans Georgian already registered with pdfFonts(). | 
|  | 46 Droid Sans Hebrew already registered with pdfFonts(). | 
|  | 47 Droid Sans Mono already registered with pdfFonts(). | 
|  | 48 Droid Sans Thai already registered with pdfFonts(). | 
|  | 49 Droid Serif already registered with pdfFonts(). | 
|  | 50 esint10 already registered with pdfFonts(). | 
|  | 51 eufm10 already registered with pdfFonts(). | 
|  | 52 FreeMono already registered with pdfFonts(). | 
|  | 53 FreeSans already registered with pdfFonts(). | 
|  | 54 FreeSerif already registered with pdfFonts(). | 
|  | 55 gargi already registered with pdfFonts(). | 
|  | 56 Garuda already registered with pdfFonts(). | 
|  | 57 Gentium already registered with pdfFonts(). | 
|  | 58 GentiumAlt already registered with pdfFonts(). | 
|  | 59 Gentium Basic already registered with pdfFonts(). | 
|  | 60 Gentium Book Basic already registered with pdfFonts(). | 
|  | 61 Junicode already registered with pdfFonts(). | 
|  | 62 KacstArt already registered with pdfFonts(). | 
|  | 63 KacstBook already registered with pdfFonts(). | 
|  | 64 KacstDecorative already registered with pdfFonts(). | 
|  | 65 KacstDigital already registered with pdfFonts(). | 
|  | 66 KacstFarsi already registered with pdfFonts(). | 
|  | 67 KacstLetter already registered with pdfFonts(). | 
|  | 68 KacstNaskh already registered with pdfFonts(). | 
|  | 69 KacstOffice already registered with pdfFonts(). | 
|  | 70 KacstOne already registered with pdfFonts(). | 
|  | 71 KacstPen already registered with pdfFonts(). | 
|  | 72 KacstPoster already registered with pdfFonts(). | 
|  | 73 KacstQurn already registered with pdfFonts(). | 
|  | 74 KacstScreen already registered with pdfFonts(). | 
|  | 75 KacstTitle already registered with pdfFonts(). | 
|  | 76 KacstTitleL already registered with pdfFonts(). | 
|  | 77 Kedage already registered with pdfFonts(). | 
|  | 78 Khmer OS already registered with pdfFonts(). | 
|  | 79 Khmer OS System already registered with pdfFonts(). | 
|  | 80 LKLUG already registered with pdfFonts(). | 
|  | 81 Lohit Bengali already registered with pdfFonts(). | 
|  | 82 Lohit Gujarati already registered with pdfFonts(). | 
|  | 83 Lohit Hindi already registered with pdfFonts(). | 
|  | 84 Lohit Punjabi already registered with pdfFonts(). | 
|  | 85 Lohit Tamil already registered with pdfFonts(). | 
|  | 86 Loma already registered with pdfFonts(). | 
|  | 87 Mallige already registered with pdfFonts(). | 
|  | 88 MarVoSym already registered with pdfFonts(). | 
|  | 89 Meera already registered with pdfFonts(). | 
|  | 90 mry_KacstQurn already registered with pdfFonts(). | 
|  | 91 msam10 already registered with pdfFonts(). | 
|  | 92 msbm10 already registered with pdfFonts(). | 
|  | 93 Mukti Narrow already registered with pdfFonts(). | 
|  | 94 NanumGothic already registered with pdfFonts(). | 
|  | 95 NanumMyeongjo already registered with pdfFonts(). | 
|  | 96 OpenSymbol already registered with pdfFonts(). | 
|  | 97 Phetsarath OT already registered with pdfFonts(). | 
|  | 98 Pothana2000 already registered with pdfFonts(). | 
|  | 99 Purisa already registered with pdfFonts(). | 
|  | 100 Rachana already registered with pdfFonts(). | 
|  | 101 Rekha already registered with pdfFonts(). | 
|  | 102 rsfs10 already registered with pdfFonts(). | 
|  | 103 Saab already registered with pdfFonts(). | 
|  | 104 Sawasdee already registered with pdfFonts(). | 
|  | 105 Tibetan Machine Uni already registered with pdfFonts(). | 
|  | 106 TlwgMono already registered with pdfFonts(). | 
|  | 107 TlwgTypewriter already registered with pdfFonts(). | 
|  | 108 Tlwg Typist already registered with pdfFonts(). | 
|  | 109 Tlwg Typo already registered with pdfFonts(). | 
|  | 110 Ubuntu already registered with pdfFonts(). | 
|  | 111 Ubuntu Condensed already registered with pdfFonts(). | 
|  | 112 Ubuntu Light already registered with pdfFonts(). | 
|  | 113 Ubuntu Mono already registered with pdfFonts(). | 
|  | 114 Ume Gothic already registered with pdfFonts(). | 
|  | 115 Ume Gothic C4 already registered with pdfFonts(). | 
|  | 116 Ume Gothic C5 already registered with pdfFonts(). | 
|  | 117 Ume Gothic O5 already registered with pdfFonts(). | 
|  | 118 Ume Gothic S4 already registered with pdfFonts(). | 
|  | 119 Ume Gothic S5 already registered with pdfFonts(). | 
|  | 120 Ume P Gothic already registered with pdfFonts(). | 
|  | 121 Ume P Gothic C4 already registered with pdfFonts(). | 
|  | 122 Ume P Gothic C5 already registered with pdfFonts(). | 
|  | 123 Ume P Gothic O5 already registered with pdfFonts(). | 
|  | 124 Ume P Gothic S4 already registered with pdfFonts(). | 
|  | 125 Ume P Gothic S5 already registered with pdfFonts(). | 
|  | 126 Ume UI Gothic already registered with pdfFonts(). | 
|  | 127 Ume UI Gothic O5 already registered with pdfFonts(). | 
|  | 128 UnBatang already registered with pdfFonts(). | 
|  | 129 UnDotum already registered with pdfFonts(). | 
|  | 130 UnGraphic already registered with pdfFonts(). | 
|  | 131 UnGungseo already registered with pdfFonts(). | 
|  | 132 UnPilgi already registered with pdfFonts(). | 
|  | 133 utkal already registered with pdfFonts(). | 
|  | 134 Vemana2000 already registered with pdfFonts(). | 
|  | 135 VL Gothic already registered with pdfFonts(). | 
|  | 136 VL PGothic already registered with pdfFonts(). | 
|  | 137 Waree already registered with pdfFonts(). | 
|  | 138 wasy10 already registered with pdfFonts(). | 
|  | 139 There were 26 warnings (use warnings() to see them) | 
|  | 140 > library(ggplot2) | 
|  | 141 > data <- read.table("tmpFile36240.dat", header = T) | 
|  | 142 > data$Sample <- factor(data$Sample, levels=c("Col", "rtl2", "35S::RTL2#1", "35S::RTL2#2", "35S::RTL1#1", "dcl2dcl3dcl4")) | 
|  | 143 > data$Size <- factor(data$Size, levels=c(21, 22, 23, 24)) | 
|  | 144 > png("/home/mzytnick/Desktop/Projects/Vaucheret/RTrna/MiRna/genomicSizes.png", width = 1000, height = 200) | 
|  | 145 > ggplot(data, aes(x = Size, y = Count, fill = Size))  + geom_bar(stat = "identity") + facet_grid(. ~ Sample, space="free_x") + xlab("Sizes") + ylab("Count") + scale_fill_manual(values = c("blue", "green", "pink", "red")) + theme(legend.position = "none", panel.grid.major = element_blank(), panel.grid.minor = element_blank(), panel.background = element_blank()) | 
|  | 146 > dev.off() | 
|  | 147 null device | 
|  | 148           1 | 
|  | 149 > | 
|  | 150 > proc.time() | 
|  | 151    user  system elapsed | 
|  | 152   1.884   0.088   3.163 |