annotate smart_toolShed/SMART/Java/Global.java @ 0:e0f8dcca02ed

Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.

/**
 *
 * Copyright INRA-URGI 2009-2010
 * 
 * This software is governed by the CeCILL license under French law and
 * abiding by the rules of distribution of free software. You can use,
 * modify and/ or redistribute the software under the terms of the CeCILL
 * license as circulated by CEA, CNRS and INRIA at the following URL
 * "http://www.cecill.info".
 * 
 * As a counterpart to the access to the source code and rights to copy,
 * modify and redistribute granted by the license, users are provided only
 * with a limited warranty and the software's author, the holder of the
 * economic rights, and the successive licensors have only limited
 * liability.
 * 
 * In this respect, the user's attention is drawn to the risks associated
 * with loading, using, modifying and/or developing or reproducing the
 * software by the user in light of its specific status of free software,
 * that may mean that it is complicated to manipulate, and that also
 * therefore means that it is reserved for developers and experienced
 * professionals having in-depth computer knowledge. Users are therefore
 * encouraged to load and test the software's suitability as regards their
 * requirements in conditions enabling the security of their systems and/or
 * data to be ensured and, more generally, to use and operate it in the
 * same conditions as regards security.
 * 
 * The fact that you are presently reading this means that you have had
 * knowledge of the CeCILL license and that you accept its terms.
 *
 */
import java.util.Vector;
import java.util.HashMap;
import javax.swing.DefaultListModel;
import javax.swing.JButton;
import javax.swing.JTextField;

public class Global {

  public static int logAreaSize = 100;

  public static String smartConfFileName = "smart.conf";

  public static String smartProgramsFileName = "programs.txt";

  public static String smartFormatsFileName = "formats.txt";

  public static String pythonPath = new String();

  public static String pythonCommand = "python";

  public static String mysqlCommand = "mysql";

  public static String rCommand = "R";

  public static Files files = new Files();

  public static Vector < String > fileNames = new Vector < String >();

  public static FormatsContainer formats = new FormatsContainer();

  public static boolean programRunning = false;

  public static HashMap < JButton, JTextField > otherFilesChooser = new HashMap < JButton, JTextField >();

  public static HashMap < JButton, JTextField > otherDirectoriesChooser = new HashMap < JButton, JTextField >();

  public static HashMap < JButton, JTextField > otherFileConcatenationChooser = new HashMap < JButton, JTextField >();

}