Mercurial > repos > yufei-luo > s_mart
annotate smart_toolShed/commons/core/launcher/test/Test_LauncherUtils.py @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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1 import unittest |
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2 from commons.core.launcher.LauncherUtils import LauncherUtils |
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3 |
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4 class Test_LauncherUtils(unittest.TestCase): |
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5 |
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6 def test_createHomogeneousSizeList_empty(self): |
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7 lHeadersSizeTuples = [] |
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8 maxSize = 500 |
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9 expLHeadersList = [] |
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10 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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11 self.assertEquals(expLHeadersList, obsLHeadersList) |
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12 |
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13 def test_createHomogeneousSizeList_one_item_upper_mean(self): |
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14 lHeadersSizeTuples = [("h1", 300)] |
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15 maxSize = 500 |
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16 expLHeadersList = [["h1"]] |
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17 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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18 self.assertEquals(expLHeadersList, obsLHeadersList) |
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19 |
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20 def test_createHomogeneousSizeList_one_item_under_mean(self): |
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21 lHeadersSizeTuples = [("h1", 100)] |
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22 maxSize = 500 |
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23 expLHeadersList = [["h1"]] |
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24 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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25 self.assertEquals(expLHeadersList, obsLHeadersList) |
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26 |
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27 def test_createHomogeneousSizeList_3items(self): |
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28 lHeadersSizeTuples = [("h1", 250), |
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29 ("h2", 250), |
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30 ("h3", 300)] |
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31 maxSize = 500 |
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32 expLHeadersList = [["h3"], ["h2"], ["h1"]] |
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33 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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34 self.assertEquals(expLHeadersList, obsLHeadersList) |
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35 |
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36 def test_createHomogeneousSizeList_4items(self): |
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37 lHeadersSizeTuples = [("h1", 100), |
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38 ("h2", 200), |
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39 ("h3", 10), |
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40 ("h4", 400)] |
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41 maxSize = 500 |
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42 expLHeadersList = [["h4", "h3"], ["h2", "h1"]] |
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43 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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44 self.assertEquals(expLHeadersList, obsLHeadersList) |
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45 |
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46 def test_createHomogeneousSizeList_5items(self): |
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47 lHeadersSizeTuples = [("h1", 300), |
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48 ("h2", 300), |
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49 ("h3", 250), |
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50 ("h4", 100), |
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51 ("h5", 90)] |
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52 maxSize = 500 |
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53 expLHeadersList = [["h2", "h5","h4"], ["h1"], ["h3"]] |
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54 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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55 self.assertEquals(expLHeadersList, obsLHeadersList) |
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56 |
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57 def test_createHomogeneousSizeList_all_upper_max(self): |
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58 lHeadersSizeTuples = [("h1", 600), |
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59 ("h2", 500), |
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60 ("h3", 700), |
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61 ("h4", 900), |
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62 ("h5", 500)] |
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63 maxSize = 500 |
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64 expLHeadersList = [["h4"], ["h3"], ["h1"], ["h5"], ["h2"]] |
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65 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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66 self.assertEquals(expLHeadersList, obsLHeadersList) |
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67 |
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68 def test_createHomogeneousSizeList_all_upper_mean(self): |
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69 lHeadersSizeTuples = [("h1", 300), |
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70 ("h2", 300), |
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71 ("h3", 300), |
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72 ("h4", 300), |
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73 ("h5", 300)] |
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74 maxSize = 500 |
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75 expLHeadersList = [["h5"], ["h4"], ["h3"], ["h2"], ["h1"]] |
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76 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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77 self.assertEquals(expLHeadersList, obsLHeadersList) |
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78 |
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79 def test_createHomogeneousSizeList_all_under_mean(self): |
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80 lHeadersSizeTuples = [("h1", 100), |
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81 ("h2", 100), |
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82 ("h3", 100), |
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83 ("h4", 100), |
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84 ("h5", 100)] |
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85 maxSize = 500 |
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86 expLHeadersList = [["h5", "h4", "h3", "h2"], ["h1"]] |
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87 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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88 self.assertEquals(expLHeadersList, obsLHeadersList) |
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89 |
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90 def test_createHomogeneousSizeList_floats(self): |
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91 lHeadersSizeTuples = [("h1", 99.1), |
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92 ("h2", 100.7), |
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93 ("h3", 100.1), |
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94 ("h4", 100.1), |
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95 ("h5", 100)] |
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96 maxSize = 500 |
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97 expLHeadersList = [['h2', 'h4', 'h3', 'h5'], ["h1"]] |
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98 obsLHeadersList = LauncherUtils.createHomogeneousSizeList(lHeadersSizeTuples, maxSize) |
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99 self.assertEquals(expLHeadersList, obsLHeadersList) |
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100 |
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101 if __name__ == "__main__": |
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102 unittest.main() |