comparison SMART/galaxy/computeCoverage.xml @ 15:440ceca58672

Uploaded

14:c79b9ae3f65f

<tool id="ComputeCoverage" name="Compute coverage">
    <description>Compute the coverage of a set with respect to another set.</description>
    <command interpreter="python">
        ../Java/Python/ComputeCoverage.py -i $formatType.inputFileName1
		#if $formatType.FormatInputFileName1 == 'bed':
			-f bed

	<outputs>
		<data name="outputFileGff" format="gff3" label="[computeCoverage] OUTPUT file"/>
	</outputs> 
	
</tool>

15:440ceca58672

<tool id="ComputeCoverage" name="compute coverage">
    <description>Compute the coverage of a set with respect to another set.</description>
    <command interpreter="python">
        ../Java/Python/ComputeCoverage.py -i $formatType.inputFileName1
		#if $formatType.FormatInputFileName1 == 'bed':
			-f bed

	<outputs>
		<data name="outputFileGff" format="gff3" label="[computeCoverage] OUTPUT file"/>
	</outputs> 
	
	<help>
This tool considers a query and a reference files, and gives the coverage of the query file by the reference. The output file is similar to the query file, where a tag **coverage** has been added.
	</help>
</tool>