Mercurial > repos > yufei-luo > s_mart
comparison SMART/Java/Python/TestFiles/testC2S.fa @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 17:b0e8584489e6 | 18:94ab73e8a190 |
|---|---|
| 1 >chr1 | |
| 2 CAACATTAGCGCCATGCCCACTGTGGGGAATTTACCAGCAGCCCGCACAC | |
| 3 TTAGCCGGCCTGCTGCAAAGCGGGATTTATTTAATTCATCCTCCAAGAGC | |
| 4 CCAAACGAGCATCCTATGAGTTTCTCGGAAGTGGTAGCTGGAGCAGGTCC | |
| 5 AGTTTCTATGGCACCCCCTAATCCGGCACCACTGACGAAAACCCCAGGAA | |
| 6 AGCGGACAAACGACGATCTGGATTGCTCAAATTTTAAGACGCCCAATAAA | |
| 7 AAATTATGCGCGACATCCAATTTTGTAACTCCCTGCATTTTTCCCCCGCT | |
| 8 CATCACACCAGTTTTCAAAAGCAAGGCAGCTCAATCTGTTTATGAGGAAT | |
| 9 CAAAAGCCAGAAACGGACCCACCCGCCAGCCGTTACCCTGTAGCATCAAT | |
| 10 GTCTCTGCTTGCAGCGCAGCGGCGCCACCCGTTATCGCCCCCCTACCCCC | |
| 11 TCAAAATACAGATGCACAGCTGCCTCCATGGAAAATCGTGCCCCAGAGCC | |
| 12 GTAGAGCACCCCCTATACTCGTCAATGATGTGAAGGAAATTGTCCCTCTC | |
| 13 CTGGAAAAGCTAAATTATACAGCAGGAGTATCCAGCTACACCACCAGAGC | |
| 14 AATAGAAGGAAACGGGGTCAGGATCCAGGCCAAGGATATGACCGCCTACA | |
| 15 ACAAAATTAAAGAAGTCCTGGTGGCCAACGGATTTCCTTTATTCACCAAC | |
| 16 CAGCCCAAGTCTGAGAGAGGCTTCCGAGTCATCATCAGACACCTCCATCA | |
| 17 TTCCACACCATGCTCGTGGATAGTCGAGGAGCTGCTGAAGCTCGGTCTCC | |
| 18 AAGCGCGCTTCGTCAGAAACATGACGAATCCAGCTACAGGTGGCCCCATG | |
| 19 CGAATGTTTGAAGTGGAGATCGTCATGGCCAAAGATGGCAGCCACGATAA | |
| 20 AATTCTCTCACTCAAACAAATCGGTGGGCAAAAGGTGGATATTGAAAGGA | |
| 21 AAAATAGGACACAGGAGCCGGTTCAGTGCTACAGATGCCAGGGCTTCAGA | |
| 22 CATGCCAAAAATTCATGCATGAGGACGCCTAAATGCATGAAATGCGCTGG | |
| 23 CGATCACCTGTCATCCTGCTGCACCAAGCCAAAATCCACCCCCGCCACCT | |
| 24 GCATCAACTGCTCTGGGGAACATATCAGCGCTTATAAAGGATGCCCCGCC | |
| 25 TACAAGGCCGAAAAACGAAAGCTGGCGGCTAACATTATTGACACAAACAA | |
| 26 AATAAGGACAATCAAAGACGCAACTAATCACTTTTATAAACGACAAGGCC | |
| 27 CCCCTCCACGTAATAATACCCCTCGACTACCGCACAGCTCAGCAATCCTG | |
| 28 ACCAAGTCAATCGCTGAAGCTCGCCAGGAAGCCGCCAAAAAGTCGATGCT | |
| 29 AAATCCTTATTGGCAAAGCTCGAACGACAGAAGGCCACGTTTCTCCTCCC | |
| 30 ATGACACTGCCATTCAAAAACGGCTAAACAAATGGCGCCGAAACTCTAAT | |
| 31 AAGATACCCAAAAAGGGTAGGATATCCTCAAAGGACAATGCAAAGCCAAG | |
| 32 ACCGGCATCCAAGACAAGCAACCCAGCGCAAAGACATCTGGAAAAATACC | |
| 33 AGGACATGCTCCGAAACGAAAGGAGTGAAGAAATTGACCATGAACCTGAA | |
| 34 AAAGGTACTCCTAATCCCAGCCGAGTCGGCAACGACAGCCCTCCGACCAC | |
| 35 CAGCAGAGCCGCCAGAGCTAACTTTAAGCCAAGAATTATCGATGAAGCTA | |
| 36 CGCCATCGCCAAGAAACTCCAATCCTTACCTACAGAAGAGCTTCTCGGAC | |
| 37 GACCCCACCATTAATCTAGCTAATAGAGTCGATAATTTAGAAAAGAAAAT | |
| 38 TGACATTTTAATGGCTTTAATCATACAAGGAACCAATAACAATAATCTTG | |
| 39 ACATTGATACATCAATCTAAATTTACATTACACTTATTTATATTTATACC | |
| 40 TATTATAAATATATATATCCGACACAAAAGCGCACGTCTGCCCACCCTTA | |
| 41 TAATGTTCTAATTATTATCACCTTCCTCGACGCAAAGCTTAAACCTCTGT | |
| 42 TGAAAAACAAATCAATTAGATGGATGACATAAAAACGTAAATAAATAATC | |
| 43 TTCTCACCTCAAGCATCCGGATAAAAAAGGCAATACGCACTCCAACTCCT | |
| 44 GATGAAGCTATGTGAAGAAAACTACACCAGGATTCAAAAGTCGAATCGGA | |
| 45 GGATGGACATGAGAAGAATCTGTGCGGCAGAAGCATGATGAATAGAGGCG | |
| 46 ACTCGCTGCAGCAAAATATGCACTACGCCACTTACCTGAATCTTCTGCGG | |
| 47 CGCAGTCTTTTTATGTACCATCATCTCCGCCGCAACCGCTTCACACAGCT | |
| 48 CCACAACATAAGATGCGCCACCAAAGCTGCCTCCGTACTGAACTGGACAT | |
| 49 CATGCGTTGCGCTGCAAATCCTATCCTATTGACGAGCGCCAACAGCGGGT | |
| 50 CTGCGCTAAAAACCTAAAAACAAAACAAAACAAAACAATTAATCAACAAC | |
| 51 AAATTGAACATAACAATCAAACAATAACAATCACTTACCTCCTTGACTGC | |
| 52 ATCCAATCGCTGACCCAAATCCAACACAACCGACAACAGGAGACGGGCTT | |
| 53 CGCAAATGCAAAACAAAATCGCCAACTTTTGCGATTATAAATACAAAAAA | |
| 54 TTGACAATTTTCTGATGCCATCTCCATCCTTTGATCCCACTGCCCAAATA | |
| 55 AGGATCATTAGCGCGGAGCTGAAGCCACATTAATAAGCTGTAAAATTGAT | |
| 56 CCCCAAAATGTATATTTCTCCTCAATACCGTATCTTCAACGAACTTTCCG | |
| 57 CCAACCTGCAATGAAAGGGAAATTAATAATAATGCTATACAGAATTAATC | |
| 58 AGCGACACATAGAAAATAGCAAACCAGACAGGCAAAGTAGTAGATGCAAA | |
| 59 CAGGCGACTCCATCCCGCCGACGACAAGCATTCAAATCCTTCATACTGAA | |
| 60 ACAAGGAAGCACAAGCCAATACTGGGAATTATTTACTCAAACAAAATACT | |
| 61 TATCTAATTACCAACTCGACGACTCCAAATACGCGGCACACCGGCTGCGA | |
| 62 TAGCTCTTAAATAAAGGGCCTCCTAATTAACTACAAAACGTACCTGAAAA | |
| 63 ATAAAACAATTAACGCAATCGTAAATAATTACAATTATAATACTCACCTC | |
| 64 CAGATTAGCCTAATGTACCTGAAAAACAAAAACAAAAATTAATGCAATAA | |
| 65 TTATAAAAACAAATAAATACAAACACAATACTTACCTCCAAATTACCTCC | |
| 66 CAGCCAAAGCACCTGAAATACAAAAACAAAGAATTAATGCAATAAATAAA | |
| 67 TCAAATAAATACAAATACAATACTCACCCCAAATAACCTCCCAGCTAATT | |
| 68 TACCTGAAAAAACAAAAATTAATACAATATTAAAAACGAATAACAAATGT | |
| 69 AATACTTACCAAATTTTAACTTTGTATTCATTTCCATGGCCCAAATCGTT | |
| 70 GCGACGGTCCTCGGCAACAAATCATGTTCCGGCGGCTCCTAGCTGCCAAT | |
| 71 CCCGACGCATTGGCCACAAGACGCGGCGCTCCTGGCAACTCTCGATGAAT | |
| 72 AACCGAGCTCCAATTTCCACGACGACTCTTCTGCCAAACGAGTCAGATTA | |
| 73 CACCAACATAATGCCAGCAGCTCCCAAACAATGCAATGACGGCTGCGCGG | |
| 74 GATCCATCTTCAGATTTTCTTCTTCCTGACGACCGGCTAAGCTGCCCTGC | |
| 75 AATTTAAGAAATTTTATTAAACAATTGCAAATATCTACCACTGAGGGTGG | |
| 76 TAGAGACAACCACCAAATGACAGCGGCGCGGGATACACCCACCACGAATA | |
| 77 GGCTTTCTGCAGCGCTGGCCGGACATGCATGTTGCGACGCGCATTCAGCG | |
| 78 TCCACAACAAGCCCCAGCCAGAATACAACAAACACTCACCTGCAATGTTT | |
| 79 CCTGAGGCTTCCAGCGACTCGGTGCTTCCGTCCTTCTGGCGGGGGTACCT | |
| 80 GAAAAGAATTAATTCAAATTATGTTAGTCTTAAATTCCAATGTTTCTTGT | |
| 81 TAAATAATTCAAATTATCAAATGTAAACATAACATACAATGTGATAATGT | |
| 82 TACCAGTCCATGTTACTGCCAAAAACCTAAGTTTACAAAAAAATACTTAC | |
| 83 CTCTTAATATTAATACTAAATCTATGTCCAATCCCCAAACTCACCCCACG | |
| 84 TAATGTACACCTCAAAAATTCAAATAATTGTACCTACATATTGCATTCTA | |
| 85 TGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTCATTCTGT | |
| 86 CTCCGTACCTCCACCAGCAAAGTTAAAAATGAAATATCCCTCATCACCGC | |
| 87 TGCAATCTACATACATGGATACAGCGCAAAAGACGGTCAACCACGTCGTC | |
| 88 TCCGAGTCGTTCAGGACACCTTGCTGCTCTCAATAACCTCCAGCCTGACG | |
| 89 AGCGCCAACAGCGAGTTGACGCTAAAACCTAAAAACAAACAACAACAAAT | |
| 90 TAAATACAAACAAATAAAATAAAATCAAACAAAACACTTACTTCACTGAC | |
| 91 AACAGCCAATTGCTGATCCACATTCAACGCAACAGACAACAGGAGACGGG | |
| 92 CCCCGCAAACGCAAAACAAAATCGCCAATTTTTGCGATTTTAAATACAAA | |
| 93 AAATCGACAATTTTACTAAGCCCTCTCCATCTCCTGATGCCACCGCCACA | |
| 94 ATAAGGATCACTAGCGCGGCGCTGATGCCACATCAATAAACCGCAATATT | |
| 95 TGTCCTCAAAACGTATACTTCTTCTCAGTATCGCAACTTCTACGAATTTC | |
| 96 CCGCTAACCTACAATGAAAGGAAAATCAATAAGAATGTGATACAAAAAAT | |
| 97 TAATCAAGGGCAAATAGAAAATAGCTTACCGGACAGGCATACTAGCAGAT | |
| 98 GCTAATATGCAACTCCATCCTTCTGAGACAAATACGCAACTCCTTTTTTC | |
| 99 CAAGATTGCAAATACTGAAACAAGGAAGCACAAGCCAATACTGGGAATTA | |
| 100 TTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATC |