Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/colorGff.xml @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
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| 1 <tool id="colorGff" name="colorGff"> | |
| 2 <description> Parses a DOOR report file and writes the information in a gff3 out file. </description> | |
| 3 <command interpreter="perl"> | |
| 4 colorGff.pl -i $inputFile -c $RGBcode > $outputFile | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
| 9 <param name="RGBcode" type="text" value="250 128 114" help="RGB code is necessary for choosing the color."/> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data format="gff3" name="outputFile" label="[colorGff] Output File"/> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 Command example: perl colorGff.pl -i trans_covUp5_nbEUp10_lgUp50.gff3 -c "250 128 114" > trans_covUp5_nbEUp10_lgUp50_c.gff3 | |
| 18 </help> | |
| 19 </tool> |