Mercurial > repos > yufei-luo > s_mart

comparison commons/core/parsing/test/data/sampleForTestVarscanToVCF.varscan @ 18:94ab73e8a190

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents
children
comparison
equal deleted inserted replaced
17:b0e8584489e6 18:94ab73e8a190
1 Chrom Position Ref Cons Reads1 Reads2 VarFreq Strands1 Strands2 Qual1 Qual2 Pvalue MapQual1 MapQual2 Reads1Plus Reads1Minus Reads2Plus Reads2Minus VarAllele
2 chr1 10759 C Y 2 1 33.33% 1 1 65 47 0.98 1 1 0 2 0 1 T
3 chr1 12438 C S 1 1 50% 1 1 62 42 0.98 1 1 0 1 0 1 G
4 chr1 17432 A M 2 1 33.33% 1 1 55 37 0.98 1 1 0 2 1 0 C
5 chr1 20391 A W 2 1 33.33% 1 1 56 37 0.98 1 1 2 0 1 0 T
6 chr1 21207 T Y 2 1 33.33% 1 1 55 41 0.98 1 1 2 0 1 0 C
7 chr1 26057 T K 11 2 15.38% 2 1 60 37 0.98 1 1 7 4 2 0 G
8 chr1 36838 T Y 2 1 33.33% 1 1 61 36 0.98 1 1 2 0 0 1 C
9 chr1 37751 A M 3 1 25% 1 1 65 42 0.98 1 1 0 3 0 1 C
10 chr1 43500 C S 3 1 25% 2 1 65 40 0.98 1 1 2 1 0 1 G
11 chr1 50481 A W 2 1 33.33% 1 1 60 40 0.98 1 1 0 2 1 0 T
12 chr1 106849 C S 3 1 25% 2 1 65 40 0.98 1 1 2 1 1 0 G
13 chr1 108726 T W 2 1 33.33% 1 1 50 41 0.98 1 1 0 2 0 1 A
14 chr1 114204 G S 4 2 33.33% 2 2 60 39 0.98 1 1 2 2 1 1 C
15 chr1 115030 A M 3 1 25% 2 1 57 41 0.98 1 1 2 1 1 0 C
16 chr1 116173 A R 7 2 22.22% 2 1 58 39 0.98 1 1 5 2 2 0 G
17 chr1 118433 G S 6 1 14.29% 2 1 64 50 0.98 1 1 4 2 1 0 C
18 chr1 119042 A R 5 1 16.67% 2 1 55 51 0.98 1 1 2 3 1 0 G
19 chr1 139219 A R 1 1 50% 1 1 65 46 0.98 1 1 1 0 0 1 G
20 chr1 140710 A R 9 2 18.18% 2 1 63 41 0.98 1 1 3 6 0 2 G
21 chr1 144419 T Y 3 1 25% 2 1 63 39 0.98 1 1 1 2 1 0 C
22 chr1 146099 G S 2 1 33.33% 2 1 64 38 0.98 1 1 1 1 0 1 C
23 chr1 146435 T Y 11 7 38.89% 2 1 60 24 0.98 1 1 4 7 7 0 C
24 chr1 147232 A W 2 1 33.33% 2 1 64 39 0.98 1 1 1 1 0 1 T
25 chr1 158703 A M 2 1 33.33% 2 1 60 55 0.98 1 1 1 1 1 0 C
26 chr1 166732 A W 4 2 33.33% 2 2 62 24 0.98 1 1 2 2 1 1 T
27 chr1 179887 C M 3 1 25% 2 1 64 39 0.98 1 1 1 2 1 0 A
28 chr1 185971 A R 3 1 25% 2 1 55 40 0.98 1 1 2 1 0 1 G
29 chr1 211074 A M 3 1 25% 1 1 65 40 0.98 1 1 3 0 0 1 C
30 chr1 219573 G S 1 1 50% 1 1 61 41 0.98 1 1 1 0 0 1 C
31 chr1 229396 C S 2 1 33.33% 2 1 57 39 0.98 1 1 1 1 0 1 G
32 chr1 236388 T K 8 2 20% 2 1 52 32 0.98 1 1 2 6 0 2 G
33 chr1 245990 G S 5 1 16.67% 2 1 61 46 0.98 1 1 3 2 1 0 C
34 chr1 249155 C S 2 1 33.33% 2 1 62 37 0.98 1 1 1 1 1 0 G
35 chr1 261257 T K 3 1 25% 1 1 60 39 0.98 1 1 0 3 0 1 G
36 chr1 274692 A R 2 1 33.33% 2 1 63 39 0.98 1 1 1 1 0 1 G
37 chr1 283468 G S 3 1 25% 2 1 63 45 0.98 1 1 2 1 1 0 C
38 chr1 284288 T W 3 1 25% 2 1 64 39 0.98 1 1 2 1 1 0 A
39 chr1 286983 T Y 2 1 33.33% 1 1 64 37 0.98 1 1 0 2 1 0 C
40 chr1 287378 C M 2 1 33.33% 2 1 65 37 0.98 1 1 1 1 0 1 A
41 chr1 302928 A R 1 1 50% 1 1 64 38 0.98 1 1 0 1 1 0 G
42 chr1 305952 C M 2 1 33.33% 1 1 65 38 0.98 1 1 0 2 0 1 A
43 chr1 307932 T Y 4 1 20% 2 1 65 42 0.98 1 1 1 3 0 1 C
44 chr1 317422 G S 3 1 25% 1 1 57 40 0.98 1 1 0 3 0 1 C
45 chr1 321480 A W 2 1 33.33% 1 1 64 38 0.98 1 1 2 0 0 1 T
46 chr1 322307 A M 1 1 50% 1 1 65 37 0.98 1 1 1 0 0 1 C
47 chr1 328326 G S 5 1 16.67% 2 1 62 52 0.98 1 1 4 1 1 0 C
48 chr1 333138 T K 3 2 40% 1 2 63 24 0.98 1 1 0 3 1 1 G
49 chr1 333388 T Y 4 1 20% 2 1 64 43 0.98 1 1 2 2 1 0 C
50 chr1 335592 T K 2 1 33.33% 1 1 58 39 0.98 1 1 2 0 1 0 G
51 chr1 336572 C S 1 1 50% 1 1 58 38 0.98 1 1 0 1 0 1 G
52 chr1 347396 T K 5 1 16.67% 2 1 62 52 0.98 1 1 2 3 1 0 G
53 chr1 359080 T K 4 1 20% 2 1 61 42 0.98 1 1 1 3 0 1 G
54 chr1 360223 A W 5 1 16.67% 2 1 54 52 0.98 1 1 2 3 0 1 T
55 chr1 361047 T K 5 1 16.67% 2 1 62 50 0.98 1 1 2 3 0 1 G
56 chr1 366048 A M 2 1 33.33% 2 1 65 39 0.98 1 1 1 1 0 1 C
57 chr1 368105 A R 3 1 25% 2 1 55 40 0.98 1 1 2 1 0 1 G
58 chr1 373782 T W 3 1 25% 2 1 64 41 0.98 1 1 2 1 1 0 A
59 chr1 378159 G K 2 1 33.33% 2 1 63 41 0.98 1 1 1 1 0 1 T
60 chr1 383945 C S 8 1 11.11% 2 1 58 57 0.98 1 1 2 6 1 0 G
61 chr1 389461 A R 1 1 50% 1 1 65 36 0.98 1 1 1 0 1 0 G
62 chr1 396860 G K 4 1 20% 1 1 65 43 0.98 1 1 0 4 0 1 T
63 chr1 397170 A R 1 1 50% 1 1 65 36 0.98 1 1 1 0 1 0 G
64 chr1 399939 A M 5 1 16.67% 2 1 63 46 0.98 1 1 1 4 0 1 C
65 chr1 400733 G S 3 1 25% 1 1 65 41 0.98 1 1 3 0 0 1 C
66 chr1 401165 A R 3 1 25% 2 1 64 41 0.98 1 1 1 2 0 1 G
67 chr1 406774 T K 3 1 25% 2 1 58 39 0.98 1 1 2 1 0 1 G
68 chr1 417293 C Y 2 1 33.33% 1 1 65 55 0.98 1 1 2 0 1 0 T
69 chr1 417723 G S 2 1 33.33% 1 1 65 49 0.98 1 1 2 0 0 1 C
70 chr1 420308 C M 1 1 50% 1 1 65 36 0.98 1 1 1 0 0 1 A
71 chr1 435579 C Y 3 1 25% 1 1 64 40 0.98 1 1 0 3 0 1 T
72 chr1 437183 G R 2 1 33.33% 1 1 65 39 0.98 1 1 0 2 0 1 A
73 chr1 437194 A W 3 1 25% 1 1 64 41 0.98 1 1 0 3 0 1 T
74 chr1 438866 G S 6 1 14.29% 2 1 62 52 0.98 1 1 5 1 0 1 C
75 chr1 446237 T Y 3 1 25% 2 1 65 39 0.98 1 1 2 1 1 0 C
76 chr1 446308 A R 2 1 33.33% 1 1 50 38 0.98 1 1 2 0 1 0 G
77 chr1 452322 A M 1 1 50% 1 1 65 36 0.98 1 1 0 1 1 0 C
78 chr1 462721 T K 1 1 50% 1 1 58 41 0.98 1 1 0 1 1 0 G
79 chr1 477145 C S 2 1 33.33% 2 1 64 39 0.98 1 1 1 1 1 0 G
80 chr1 493772 G S 3 1 25% 2 1 65 40 0.98 1 1 1 2 1 0 C
81 chr1 498962 C M 2 1 33.33% 2 1 65 41 0.98 1 1 1 1 1 0 A
82 chr1 510532 T Y 4 1 20% 2 1 64 53 0.98 1 1 2 2 1 0 C
83 chr1 516369 T Y 1 1 50% 1 1 34 40 0.98 1 1 1 0 1 0 C
84 chr1 523631 G K 3 1 25% 2 1 64 40 0.98 1 1 1 2 0 1 T
85 chr1 524680 C Y 2 1 33.33% 1 1 65 41 0.98 1 1 0 2 0 1 T
86 chr1 525898 T K 3 1 25% 2 1 62 49 0.98 1 1 2 1 1 0 G
87 chr1 526118 A M 5 1 16.67% 2 1 61 50 0.98 1 1 2 3 0 1 C
88 chr1 535762 C Y 3 1 25% 1 1 65 42 0.98 1 1 3 0 1 0 T
89 chr1 543235 G K 1 1 50% 1 1 45 41 0.98 1 1 1 0 1 0 T
90 chr1 550086 T Y 3 1 25% 1 1 50 41 0.98 1 1 3 0 1 0 C
91 chr1 550508 A R 3 1 25% 2 1 55 40 0.98 1 1 1 2 0 1 G
92 chr1 551143 G S 2 1 33.33% 1 1 65 39 0.98 1 1 0 2 1 0 C
93 chr1 552924 A R 6 2 25% 2 2 62 38 0.98 1 1 4 2 1 1 G
94 chr1 553541 A R 7 1 12.5% 2 1 65 52 0.98 1 1 4 3 0 1 G
95 chr1 560806 T Y 5 1 16.67% 2 1 65 49 0.98 1 1 2 3 0 1 C
96 chr1 562736 C S 5 1 16.67% 1 1 64 52 0.98 1 1 0 5 1 0 G
97 chr1 563224 T Y 2 1 33.33% 1 1 51 39 0.98 1 1 2 0 1 0 C
98 chr1 564217 T W 3 1 25% 2 1 62 40 0.98 1 1 1 2 0 1 A
99 chr1 567288 C Y 2 1 33.33% 2 1 65 40 0.98 1 1 1 1 1 0 T
100 chr1 569652 T Y 1 1 50% 1 1 48 42 0.98 1 1 1 0 0 1 C
101 chr1 570280 G K 7 1 12.5% 2 1 60 53 0.98 1 1 1 6 0 1 T
102 chr1 582185 T Y 1 1 50% 1 1 63 40 0.98 1 1 1 0 1 0 C
103 chr1 582453 G S 1 1 50% 1 1 65 38 0.98 1 1 0 1 0 1 C
104 chr1 583477 T K 2 1 33.33% 2 1 62 39 0.98 1 1 1 1 1 0 G
105 chr1 584179 G K 3 1 25% 2 1 65 41 0.98 1 1 2 1 0 1 T
106 chr1 589074 G S 2 1 33.33% 2 1 65 36 0.98 1 1 1 1 0 1 C
107 chr1 596641 C S 2 1 33.33% 1 1 65 40 0.98 1 1 2 0 0 1 G
108 chr1 599263 G K 2 1 33.33% 1 1 60 38 0.98 1 1 2 0 0 1 T