Mercurial > repos > yufei-luo > s_mart
comparison commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB2Map.py @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
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17:b0e8584489e6 | 18:94ab73e8a190 |
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1 import os | |
2 import unittest | |
3 from commons.core.utils.FileUtils import FileUtils | |
4 from commons.pyRepetUnit.profilesDB.ProfilesDB2Map import ProfilesDB2Map | |
5 | |
6 class Test_F_ProfilesDB2Map(unittest.TestCase): | |
7 | |
8 def setUp(self): | |
9 self.profilesDB2Map = ProfilesDB2Map() | |
10 self._inputFile = "./datas/myhmms" | |
11 self._outputFile = "./datas/outputFile.map" | |
12 self._expectedFile = "./datas/profiles.map" | |
13 self._createProfilesMapFile() | |
14 | |
15 def tearDown(self): | |
16 os.remove(self._outputFile) | |
17 os.remove(self._expectedFile) | |
18 | |
19 def testRun(self): | |
20 self.profilesDB2Map.setInputFile(self._inputFile) | |
21 self.profilesDB2Map.setOutputFile(self._outputFile) | |
22 pfamDB = self.profilesDB2Map.run() | |
23 self.assertTrue(FileUtils.are2FilesIdentical(self._expectedFile, self._outputFile)) | |
24 | |
25 def _createProfilesMapFile(self): | |
26 f = open(self._expectedFile, "w") | |
27 f.write("rrm\t\t1\t77\n") | |
28 f.write("fn3\tFibronectin type III domain\t1\t84\n") | |
29 f.write("pkinase\tProtein kinase domain\t1\t294\n") | |
30 f.close() | |
31 | |
32 | |
33 if __name__ == "__main__": | |
34 unittest.main() |