diff commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB2Map.py @ 18:94ab73e8a190

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB2Map.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,34 @@
+import os
+import unittest
+from commons.core.utils.FileUtils import FileUtils
+from commons.pyRepetUnit.profilesDB.ProfilesDB2Map import ProfilesDB2Map
+
+class Test_F_ProfilesDB2Map(unittest.TestCase):
+    
+    def setUp(self):
+        self.profilesDB2Map = ProfilesDB2Map()
+        self._inputFile = "./datas/myhmms"
+        self._outputFile = "./datas/outputFile.map"
+        self._expectedFile = "./datas/profiles.map" 
+        self._createProfilesMapFile()
+        
+    def tearDown(self):
+        os.remove(self._outputFile)
+        os.remove(self._expectedFile)
+        
+    def testRun(self):
+        self.profilesDB2Map.setInputFile(self._inputFile)
+        self.profilesDB2Map.setOutputFile(self._outputFile)
+        pfamDB = self.profilesDB2Map.run()
+        self.assertTrue(FileUtils.are2FilesIdentical(self._expectedFile, self._outputFile))
+        
+    def _createProfilesMapFile(self):
+        f = open(self._expectedFile, "w")
+        f.write("rrm\t\t1\t77\n")
+        f.write("fn3\tFibronectin type III domain\t1\t84\n")
+        f.write("pkinase\tProtein kinase domain\t1\t294\n")
+        f.close()   
+                   
+        
+if __name__ == "__main__":                 
+    unittest.main()       
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