diff SMART/Java/Python/100% @ 31:0ab839023fe4

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/100%	Tue Apr 30 14:33:21 2013 -0400
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+
+R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
+Copyright (C) 2012 The R Foundation for Statistical Computing
+ISBN 3-900051-07-0
+Platform: x86_64-pc-linux-gnu (64-bit)
+
+R is free software and comes with ABSOLUTELY NO WARRANTY.
+You are welcome to redistribute it under certain conditions.
+Type 'license()' or 'licence()' for distribution details.
+
+  Natural language support but running in an English locale
+
+R is a collaborative project with many contributors.
+Type 'contributors()' for more information and
+'citation()' on how to cite R or R packages in publications.
+
+Type 'demo()' for some demos, 'help()' for on-line help, or
+'help.start()' for an HTML browser interface to help.
+Type 'q()' to quit R.
+
+[Previously saved workspace restored]
+
+> library(extrafont)
+Registering fonts with R
+There were 50 or more warnings (use warnings() to see the first 50)
+> loadfonts()
+Padauk already registered with pdfFonts().
+Padauk Book already registered with pdfFonts().
+Abyssinica SIL already registered with pdfFonts().
+cmex10 already registered with pdfFonts().
+cmmi10 already registered with pdfFonts().
+cmr10 already registered with pdfFonts().
+cmsy10 already registered with pdfFonts().
+DejaVu Sans already registered with pdfFonts().
+DejaVu Sans Condensed already registered with pdfFonts().
+DejaVu Sans Light already registered with pdfFonts().
+DejaVu Sans Mono already registered with pdfFonts().
+DejaVu Serif already registered with pdfFonts().
+DejaVu Serif Condensed already registered with pdfFonts().
+Droid Arabic Naskh already registered with pdfFonts().
+Droid Sans already registered with pdfFonts().
+Droid Sans Armenian already registered with pdfFonts().
+Droid Sans Ethiopic already registered with pdfFonts().
+Droid Sans Fallback already registered with pdfFonts().
+Droid Sans Georgian already registered with pdfFonts().
+Droid Sans Hebrew already registered with pdfFonts().
+Droid Sans Mono already registered with pdfFonts().
+Droid Sans Thai already registered with pdfFonts().
+Droid Serif already registered with pdfFonts().
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+Garuda already registered with pdfFonts().
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+Gentium Basic already registered with pdfFonts().
+Gentium Book Basic already registered with pdfFonts().
+Junicode already registered with pdfFonts().
+KacstArt already registered with pdfFonts().
+KacstBook already registered with pdfFonts().
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+Lohit Tamil already registered with pdfFonts().
+Loma already registered with pdfFonts().
+Mallige already registered with pdfFonts().
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+Meera already registered with pdfFonts().
+mry_KacstQurn already registered with pdfFonts().
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+Mukti Narrow already registered with pdfFonts().
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+Ubuntu already registered with pdfFonts().
+Ubuntu Condensed already registered with pdfFonts().
+Ubuntu Light already registered with pdfFonts().
+Ubuntu Mono already registered with pdfFonts().
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+Ume P Gothic already registered with pdfFonts().
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+Ume UI Gothic already registered with pdfFonts().
+Ume UI Gothic O5 already registered with pdfFonts().
+UnBatang already registered with pdfFonts().
+UnDotum already registered with pdfFonts().
+UnGraphic already registered with pdfFonts().
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+There were 26 warnings (use warnings() to see them)
+> library(ggplot2)
+> data <- read.table("tmpFile36240.dat", header = T)
+> data$Sample <- factor(data$Sample, levels=c("Col", "rtl2", "35S::RTL2#1", "35S::RTL2#2", "35S::RTL1#1", "dcl2dcl3dcl4"))
+> data$Size <- factor(data$Size, levels=c(21, 22, 23, 24))
+> png("/home/mzytnick/Desktop/Projects/Vaucheret/RTrna/MiRna/genomicSizes.png", width = 1000, height = 200)
+> ggplot(data, aes(x = Size, y = Count, fill = Size))  + geom_bar(stat = "identity") + facet_grid(. ~ Sample, space="free_x") + xlab("Sizes") + ylab("Count") + scale_fill_manual(values = c("blue", "green", "pink", "red")) + theme(legend.position = "none", panel.grid.major = element_blank(), panel.grid.minor = element_blank(), panel.background = element_blank())
+> dev.off()
+null device 
+          1 
+> 
+> proc.time()
+   user  system elapsed 
+  1.884   0.088   3.163