Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/ConvertTranscriptFile_Gff2ToCsv.xml @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 769e306b7933
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/ConvertTranscriptFile_Gff2ToCsv.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,15 @@
+<tool id="ConvertTranscriptFile_Gff2ToCsv" name="Gff2 -> Csv">
+  <description>Convert Gff2 File to Csv File.</description>
+  <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f gff2 -o $outputFile -g csv yes 2>$logFile </command>
+  <inputs>
+    <param name="inputFile" type="data" label="Input File" format="gff"/>
+  </inputs>
+
+  <outputs>
+    <data format="csv" name="outputFile" label="[gff2 -> csv] Output File"/>
+    <data format="txt" name="logFile" label="[gff2 -> csv] Log File"/>
+  </outputs>
+
+  <help>
+  </help>
+</tool>