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view SMART/bacteriaRegulatoryRegion_Detection/colorGff.xml @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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<tool id="colorGff" name="colorGff">
	<description> Parses a DOOR report file and writes the information in a gff3 out file. </description>
		<command interpreter="perl"> 
			colorGff.pl -i $inputFile -c $RGBcode > $outputFile  
		</command>

	<inputs>
		<param name="inputFile" type="data" label="Input File" format="gff"/>
		<param name="RGBcode" type="text" value="250 128 114" help="RGB code is necessary for choosing the color."/>
	</inputs>

	<outputs>
		<data format="gff3" name="outputFile" label="[colorGff] Output File"/>
	</outputs>

	<help>
		Command example: perl colorGff.pl -i trans_covUp5_nbEUp10_lgUp50.gff3 -c "250 128 114" > trans_covUp5_nbEUp10_lgUp50_c.gff3
	</help>
</tool>