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view SMART/galaxy/ConvertTranscriptFile_BlastToSam.xml @ 32:3441fe98a2ba

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author m-zytnicki
date Tue, 30 Apr 2013 14:34:10 -0400
parents 769e306b7933
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<tool id="ConvertTranscriptFile_BlastToSam" name="Blast (-m 8) -> Sam">
  <description>Convert Blast (-m 8) File to Sam File.</description>
  <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g sam yes 2>$logFile </command>
  <inputs>
    <param name="inputFile" type="data" label="Input File" format="tabular"/>
  </inputs>

  <outputs>
    <data format="sam" name="outputFile" label="[blast -> sam] Output File"/>
    <data format="txt" name="logFile" label="[blast -> sam] Log File"/>
  </outputs>

  <help>
  </help>
</tool>