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view commons/pyRepetUnit/hmmer/hmmOutput/tests/datas/hmmscanOutputTab.txt @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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#                                                                                        --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name                       accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- -----             -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
rve                  PF00665.18   169 Polinton-1_DY:classII:Polinton_4 -           4927   5.4e-30  103.7   1.8   1   2       0.7   2.4e+03   -3.3   0.0    50    78  2742  2766  2739  2766 0.80 Integrase core domain
rve                  PF00665.18   169 Polinton-1_DY:classII:Polinton_4 -           4927   5.4e-30  103.7   1.8   2   2   1.9e-33   6.7e-30  103.4   0.7     4   168  2951  3101  2947  3102 0.92 Integrase core domain
Chromo               PF00385.16    69 Polinton-1_DY:classII:Polinton_4 -           4927   3.3e-06   26.0   0.0   1   1   2.5e-09   8.5e-06   24.7   0.0     4    51  3198  3228  3195  3239 0.75 'chromo' (CHRromatin Organisation MOdifier) domain
GARS_A               PF01071.11   208 Polinton-1_DY:classII:Polinton_4 -           4927       7.6    3.0   0.7   1   1    0.0031        11    2.5   0.5   196   204  2117  2125  2117  2125 0.95 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain