Mercurial > repos > yufei-luo > s_mart
changeset 3:4eaf0e192d11
Uploaded
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 11:04:12 -0500 |
| parents | 7c697a8bde9f |
| children | 1fc014126d55 |
| files | smart_toolShed/README.txt |
| diffstat | 1 files changed, 61 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/smart_toolShed/README.txt Thu Jan 17 11:04:12 2013 -0500 @@ -0,0 +1,61 @@ +---------- +| NAME | +---------- +S-MART + + +Description +----------- +Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data. + +S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization. + +S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. + + +Instructions +------------ +Environment Installation : +1). Put the downloaded S-MART directories into your Galaxy tools directory. +2). Open .bashrc (if it dosen't exist, create one). +Write or add the S-MART directory path to PYTHONPATH : +export PYTHONPATH=S-MART_PATH:/usr/lib/python2.7/ +(ex. export PYTHONPATH=/home/user/galaxy-dist/tools/smart_toolShed/) +3). Run .bashrc using . .bashrc command. + +Supplementary Softwares : +Installation instructions and the user guide are available in the file +"documentation.pdf". + + +Copyright +--------- +Copyright INRA-URGI 2009-2013 + + +Authors +------- +Matthias Zytnicki + + +Contact +------- +urgi-support@versailles.inra.fr + + +License +------- +This library is distributed under the terms of the CeCILL license +(http://www.cecill.info/index.en.html). +See the LICENSE.txt file. + + +Acknowledgements +---------------- +This product needs the following softwares : + * R, under the GNU General Public License + * MySQL, under the GNU General Public License + * Python, under the Python License, compatible with the GNU General Public License + * MySQL for Python, under the GNU General Public License + * Java, under the GNU General Public License +