Mercurial > repos > yufei-luo > s_mart
changeset 2:7c697a8bde9f
Deleted selected files
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 11:02:49 -0500 |
| parents | 30c5431d8ce4 |
| children | 4eaf0e192d11 |
| files | smart_toolShed/README.pdf smart_toolShed/README.txt smart_toolShed/SMART/Java/README.txt smart_toolShed/SMART/Java/doc.pdf |
| diffstat | 4 files changed, 0 insertions(+), 111 deletions(-) [+] |
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--- a/smart_toolShed/README.txt Thu Jan 17 11:01:51 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,60 +0,0 @@ ----------- -| NAME | ----------- -S-MART - - -Description ------------ -Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data. - -S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization. - -S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. - - -Instructions ------------- -Environment Installation : -1). Put the downloaded S-MART directories into your Galaxy tools directory. -2). Open .bashrc (if it dosen't exist, create one). -Write or add the S-MART directory path to PYTHONPATH : -export PYTHONPATH=S-MART_PATH:/usr/lib/python2.7/ -(ex. export PYTHONPATH=/home/user/galaxy-dist/tools/smart_toolShed/) -3). Run .bashrc using . .bashrc command. - -Supplementary Softwares : -Installation instructions and the user guide are available in the file "doc.pdf". - - -Copyright ---------- -Copyright INRA-URGI 2009-2013 - - -Authors -------- -Matthias Zytnicki - - -Contact -------- -urgi-support@versailles.inra.fr - - -License -------- -This library is distributed under the terms of the CeCILL license -(http://www.cecill.info/index.en.html). -See the LICENSE.txt file. - - -Acknowledgements ----------------- -This product needs the following softwares : - * R, under the GNU General Public License - * MySQL, under the GNU General Public License - * Python, under the Python License, compatible with the GNU General Public License - * MySQL for Python, under the GNU General Public License - * Java, under the GNU General Public License -
--- a/smart_toolShed/SMART/Java/README.txt Thu Jan 17 11:01:51 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,51 +0,0 @@ ----------- -| NAME | ----------- -S-MART - - -Description ------------ -Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data. - -S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization. - -S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. - - -Instructions ------------- -Installation instructions and the user guide are available in the file "doc.pdf". - - -Copyright ---------- -Copyright INRA-URGI 2009-2010 - - -Authors -------- -Matthias Zytnicki - - -Contact -------- -urgi-contact@versailles.inra.fr - - -License -------- -This library is distributed under the terms of the CeCILL license -(http://www.cecill.info/index.en.html). -See the LICENSE.txt file. - - -Acknowledgements ----------------- -This product needs the following softwares : - * R, under the GNU General Public License - * MySQL, under the GNU General Public License - * Python, under the Python License, compatible with the GNU General Public License - * MySQL for Python, under the GNU General Public License - * Java, under the GNU General Public License -