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annotate run_step2_kobas.sh @ 0:21bf5bc8b28f draft default tip

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author zeamxie
date Fri, 29 Jul 2016 16:32:52 -0400
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1 #!/bin/sh -l
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2 #PBS -q bioinf
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3 #PBS -l nodes=1:ppn=1
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4 #PBS -l walltime=4:00:00
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5 #PBS -N run_step2_kobas
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6 #PBS -o run_step2_kobas.out
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7 #PBS -e run_step2_kobas.err
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8 #PBS -m bea
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9 cd $PBS_O_WORKDIR
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10 module load bioinfo python
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11 #/group/bioinfo/apps/apps/kobas-2.1.0/scripts/annotate.py
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12 module load bioinfo KOBAS
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13 module load blast
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14
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15 annotate.py -i diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.fa -t fasta:pro -s pvu -o diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.anno1