Mercurial > repos > zeamxie > viewbs
diff run_step2_kobas.sh @ 0:21bf5bc8b28f draft default tip
Uploaded
| author | zeamxie |
|---|---|
| date | Fri, 29 Jul 2016 16:32:52 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/run_step2_kobas.sh Fri Jul 29 16:32:52 2016 -0400 @@ -0,0 +1,15 @@ +#!/bin/sh -l +#PBS -q bioinf +#PBS -l nodes=1:ppn=1 +#PBS -l walltime=4:00:00 +#PBS -N run_step2_kobas +#PBS -o run_step2_kobas.out +#PBS -e run_step2_kobas.err +#PBS -m bea +cd $PBS_O_WORKDIR +module load bioinfo python +#/group/bioinfo/apps/apps/kobas-2.1.0/scripts/annotate.py +module load bioinfo KOBAS +module load blast + +annotate.py -i diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.fa -t fasta:pro -s pvu -o diffPeak_DiffBind_H3K9me2_all_genes.decre.fil5k.anno1