Mercurial > repos > ziru-zhou > bamedit
comparison tool_dependencies.xml @ 6:44ed69152a1e draft
Uploaded
| author | ziru-zhou |
|---|---|
| date | Tue, 18 Dec 2012 09:35:39 -0500 |
| parents | 671c4c5ce125 |
| children | f3a394b6cbb7 |
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| 5:671c4c5ce125 | 6:44ed69152a1e |
|---|---|
| 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 5 </set_environment> | 5 </set_environment> |
| 6 <package name="samtools" version="0.1.12"> | 6 <package name="samtools" version="0.1.12"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="shell_command">git clone https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action> | 9 <action type="shell_command">wget https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action> |
| 10 <action type="shell_command">chmod ago+x samtools</action> | 10 <action type="shell_command">chmod ago+x samtools</action> |
| 11 <action type="shell_command">chmod ago+x maq2sam-long</action> | 11 <action type="shell_command">chmod ago+x maq2sam-long</action> |
| 12 <action type="move_file"> | 12 <action type="move_file"> |
| 13 <source>samtools</source> | 13 <source>samtools</source> |
| 14 <destination>$INSTALL_DIR/bin</destination> | 14 <destination>$INSTALL_DIR/bin</destination> |