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Retrieve Data (version 4.2.13+galaxy0)

Organism Common Name Source:

Organism:

Organism Sequence(s) Source:

Include fasta in the GFF3 file:

The fasta is available separately in the cDNA sequence file, but some tools might prefer it included in the GFF3 file.

Fail hard if any portion of the export fails:

By default it will just print a warning message, this causes any error to be fatal.

What it does

Exports the sequence data and annotations from Apollo.

If you provide an Apollo JSON file as input to the Organism Common Name list, this will enable extracting multiple organism's data at once from Apollo. Beware that currently all gff3 and fasta responses are merged together. If you have two separate organisms with identically named reference sequences, it will not be possible to separate those out.

Citation

If you use this tool in Galaxy, please cite: Helena Rasche, Anthony Bretaudeau, and Mateo Boudet (2019), Galaxy Apollo Tools