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Repository apollo_export
Owner: gga
Synopsis: Retrieve Data (from the Apollo tool suite)
Talk to a (local) apollo server from Galaxy
Type: unrestricted
Revision: 17:f6e09a37bc8b
This revision can be installed: True
Times cloned / installed: 1319

Repository README files - may contain important installation or license information

Galaxy-apollo

Galaxy tools to interface with Apollo. Uses python-apollo for most of it.

Environment

The following environment variables can be set:

ENV Use
$GALAXY_WEBAPOLLO_URL The URL at which Apollo is accessible, internal to Galaxy and where the tools run. Must be absolute, with FQDN and protocol.
$GALAXY_WEBAPOLLO_USER The admin user which Galaxy should use to talk to Apollo.
$GALAXY_WEBAPOLLO_PASSWORD The password for the admin user.
$ARROW_GLOBAL_CONFIG_PATH Path to a python-apollo/arrow conf file. Use in place of $GALAXY_WEBAPOLLO_URL, $GALAXY_WEBAPOLLO_USER and $GALAXY_WEBAPOLLO_PASSWORD.
$GALAXY_WEBAPOLLO_EXT_URL May be relative or absolute. The external URL at which Apollo is accessible to end users.
$GALAXY_SHARED_DIR Directory shared between Galaxy and Apollo, used to exchange JBrowse instances. If not set, JBrowse data will be zipped and sent to the remote server.
$GALAXY_APOLLO_ORG_SUFFIX Set to 'id' if you want organism names to be suffixed with user id to avoid name collisions. Set to 'email' to use user email as suffix. Leave empty for no suffix.

License

All python scripts, wrappers, and the webapollo.py are licensed under MIT license.

Contents of this repository

Name Description Version Minimum Galaxy Version
from Apollo into Galaxy 4.2.13+galaxy0 16.01

Categories
Web Services - Tools enabling access to web services