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Create or Update Organism (version 4.2.13+galaxy0)

JBrowse HTML Output:

Organism Common Name Source:

Organism:

Genus:

Species:

Is Organism Public:

Grant access to a user group:

Remove old data directory:

Update genome sequences:

Select this if you want Apollo to reload the genome sequences when updating an existing organism. BEWARE! You will lose annotation data for all sequences that are not present anymore in the new jbrowse dataset.

test_hack:

What it does

Adds an organism to the Apollo database. The tool takes the output of a JBrowse run as that contains all of the necessary information for which tracks are appropriate for a given analysis.

WARNINGS

Do not use names which conflict with other users.
If you provide an Apollo JSON file, only the first organism block will be used in Common Name determination, as it is improbable you wish to apply a single JBrowse instance to multiple organisms.

Citation

If you use this tool in Galaxy, please cite: Helena Rasche, Anthony Bretaudeau, and Mateo Boudet (2019), Galaxy Apollo Tools