Detect SSRs using MISA (version 1.0.0)

fasta Source file:

Min Repeats for Unit Size 1:

Min Repeats for Unit Size 2:

Min Repeats for Unit Size 3:

Min Repeats for Unit Size 4:

Min Repeats for Unit Size 5:

Min Repeats for Unit Size 6:

Interruptions:max_difference_between_2_SSRs:

Detect simple sequence repeats using MISA - MIcroSAtellite identification tool

The MISA script was developed at IPK by Thomas Thiel

CITATION

Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)

THEORETICAL AND APPLIED GENETICS Volume 106, Number 3, 411-422

DOI: 10.1007/s00122-002-1031-0

TIP The primer design tool will work more predictably if fasta header lines are simplied to only include the sequence ID