What it does

This tool obtains certain common attributes of the sequences contained in a gff3 format file.

Dependencies

Perl is required for running this tool.

Input

A gff3 file with protein attributes is required.

Generic Feature Format Version 3 (GFF3)

The GFF3 format is a flat tab-delimited file, which is much richer then the TSV output format. It allows you to trace back from matches to predicted proteins and to nucleic acid sequences. It also contains a FASTA format representation of the predicted protein sequences and their matches. You will find a documentation of all the columns and attributes used on [http://www.sequenceontology.org/gff3.shtml].

Output

A text file is generated by this tool.

Example Output

The common atributes of the sequences Q0KIY3 P02185 P02178 Q0KIY5 Q0KIY1 are:

For Name atribute: SSF46458 PF00042 PR00613 G3DSA:1.10.490.10 PS01033

For Ontology_term atribute: "GO:0005506" "GO:0020037" "GO:0015671" "GO:0019825"

For Dbxref atribute: "InterPro:IPR009050" "InterPro:IPR000971" "InterPro:IPR002335" "InterPro:IPR012292"

Galaxy Wrapper Authors:

* Laura Entrambasaguas
* Ginés Almagro
* Fernando Pérez