Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

Changesets
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planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 45f13845a19ba74f7a6284cc06371ec64213d832
35:cbf3f518b668
34:b6893f57f8d8
b'peterjc'
2024-02-22
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planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 028e3e806ba6df913403a2a083a354dfa713755f
34:b6893f57f8d8
33:d999e774072a
b'peterjc'
2024-02-22
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Fix for get_species_taxids
33:d999e774072a
32:a52d2d93e595
b'peterjc'
2023-11-19
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Update for NCBI BLAST+ 2.14.1
32:a52d2d93e595
31:0e3cf9594bb7
b'peterjc'
2023-10-26
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Update with window size fix
31:0e3cf9594bb7
30:acf4e47b734c
b'peterjc'
2022-06-07
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"2.10.1+galaxy1 with taxid improvements"
30:acf4e47b734c
29:5edc472ec434
b'peterjc'
2022-03-29
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"Updated to 2.10.1+galaxy0"
29:5edc472ec434
28:87a7ee4cb36f
b'peterjc'
2020-09-10
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"Updated to 2.9.0+galaxy0"
28:87a7ee4cb36f
27:6f8ea4b9a2c4
b'peterjc'
2020-09-10
Repository metadata is associated with this change set.
"planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 3f9f39ad808325a11d9967980d2cb82c96d69324"
27:6f8ea4b9a2c4
26:2889433c7ae1
b'peterjc'
2020-09-09
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v0.3.3 - fixed legacy dependecy definition
26:2889433c7ae1
25:e25d3acf6e68
b'peterjc'
2019-07-20
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v0.3.1 completed gzip support
25:e25d3acf6e68
24:c877294f8025
b'peterjc'
2018-10-23
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Fixed tool_dependencies.xml
24:c877294f8025
23:31e517610e1f
b'peterjc'
2018-07-09
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v0.3.0 Updated for NCBI BLAST+ 2.7.1
23:31e517610e1f
22:6f386c5dc4fb
b'peterjc'
2018-06-30
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v0.2.01 add -max_hsps, -use_sw_tback; lists args; internal updates
22:6f386c5dc4fb
21:7538e2bfcd41
b'peterjc'
2017-09-18
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v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
21:7538e2bfcd41
20:3034ce97dd33
b'peterjc'
2017-04-19
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Uploaded v0.1.08, can search multiple local databases, fixes a pipe problem in blastdbcmd, and minor internal changes.
20:3034ce97dd33
19:7f3c448e119b
b'peterjc'
2016-11-07
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v0.1.07 - fix macro problem in blastxml_to_tabular.xml, reenable .loc tests
19:7f3c448e119b
18:577d9c12411a
b'peterjc'
2015-11-19
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v0.1.06, now using BLAST+ 2.2.31
18:577d9c12411a
17:697f40151eaf
b'peterjc'
2015-09-07
Repository metadata is associated with this change set.
v0.1.05 - Update citation information now GigaScience paper is out
17:697f40151eaf
16:b5f1f599d1fb
b'peterjc'
2015-09-04
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Uploaded v0.1.04, fix regression with BLAST database from history
16:b5f1f599d1fb
15:c16c30e9ad5b
b'peterjc'
2015-07-22
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Uploaded v0.1.03 (internal changes); v0.1.02 (BLAST+ 2.2.30 etc)
15:c16c30e9ad5b
14:2fe07f50a41e
b'peterjc'
2015-07-05
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Uploaded v0.1.01 - Requires blastdbd datatype (blast_datatypes v0.0.19). Support for makeprofiledb to create protein domain databases and use them in RPS-BLAST and RPS-TBLASTN. Tools now support GI and SeqID filters, and embed the citations.
14:2fe07f50a41e
13:623f727cdff1
b'peterjc'
2014-12-01
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Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
13:623f727cdff1
12:6560192c5098
b'peterjc'
2014-03-14
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Re-uploaded v0.0.22, in order to update the blast_datatypes dependency
12:6560192c5098
11:4c4a0da938ff
b'peterjc'
2014-01-21
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Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. Supports $GALAXY_SLOTS. Includes more tests and heavy use of macros.
11:4c4a0da938ff
10:70e7dcbf6573
b'peterjc'
2013-12-05
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Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback.
10:70e7dcbf6573
9:9dabbfd73c8a
b'peterjc'
2013-09-23
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Uploaded v0.0.19, adds wrappers for rpsblast and rpstblastn with new blastdb_d.loc file for their protein domain database. Also includes other minor improvements.
9:9dabbfd73c8a
8:1f546099212f
b'peterjc'
2013-04-25
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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
8:1f546099212f
7:4ce66a5401d0
b'peterjc'
2013-02-19
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Uploaded v0.0.16, declares explicit dependency on the 'blast_datatypes' repository.
7:4ce66a5401d0
6:a23b0627623c
b'peterjc'
2013-02-08
Uploaded v0.0.15, clearer warning about searching against a FASTA file.
6:a23b0627623c
5:393a7a35383c
b'peterjc'
2013-01-24
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Uploaded v0.0.14 adding local BLAST database support. This *requires* the matching update to the blast_datatypes repository. This adds basic wrappers for makeblastdb and blastdbinfo. This update includes work by Edward Kirton.
5:393a7a35383c
4:9d5beacae92b
b'peterjc'
2012-11-09
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Uploaded v0.0.13 which uses the recently added error handling. No longer bundles the hide_stderr.py script which is now redundant.
4:9d5beacae92b
3:643338ac83c0
b'peterjc'
2012-09-19
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Uploaded v0.0.12b, same code but moving folders around to match all my other tools and make future development simpler.
3:643338ac83c0
2:ab1a8640f817
b'peterjc'
2012-08-23
Uploaded v0.0.12 again, without extra path
2:ab1a8640f817
1:27d7e1deada4
b'peterjc'
2012-08-23
Uploaded v0.0.12 of the NCBI BLAST+ wrappers. Implements genetic code option for translation searches. Changes <parallelism> to 1000 sequences at a time (to cope with very large sets of queries where BLAST+ can become memory hungry). Include warning that BLAST+ with subject FASTA gives pairwise e-values.
1:27d7e1deada4
0:d375502056f1
b'peterjc'
2012-08-23
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Uploaded
0:d375502056f1
None
b'devteam'
2012-08-17