Repository 'shrnaseq'
hg clone https://toolshed.g2.bx.psu.edu/repos/shians/shrnaseq

Changesets
Requirements temporarily removed
18:11777fbeac32
17:438f2733bc27
b'shian_su'
2016-02-17
merge
17:438f2733bc27
16:525bf4364896
b'shian_su'
2016-02-15
Repository metadata is associated with this change set.
- Fixed sample reads filter statistics a bit more
16:525bf4364896
15:5a917ea5bed2
b'shian_su'
2015-01-12
- Fixed read requirement report statistic.
15:5a917ea5bed2
14:44130e484a97
b'shian_su'
2015-01-12
- Fixed xml file so tool actually functions
14:44130e484a97
13:7aaa9bc23e3c
b'shian_su'
2014-11-19
Repository metadata is associated with this change set.
Added support for paired end reads - Changed terminology to generalise to sgRNA CRISPR experiments. - Added option to include second factor for statistical power - Added option to filter out samples with low counts - Added support for paired end reads - Added option to highlight only positive or negative fold change in smear plot - Fixed bug that caused tool to stop if more than enough sample annotations were supplied
13:7aaa9bc23e3c
12:ebb4cb1e8e35
b'shian_su'
2014-10-14
Repository metadata is associated with this change set.
- Fixed BCV plot pdf not showing in the html output
12:ebb4cb1e8e35
11:c0a76e30d61b
b'shian_su'
2014-10-01
- Removed max on cpm filtering. Really shouldn't have been there in the first place. - Added explicit arguments to processHairpinReads in R.
11:c0a76e30d61b
10:8923d4ea858b
b'shian_su'
2014-09-30
Repository metadata is associated with this change set.
- Added check for zero library size, will now filter out zero library size samples and generate report of filtered samples in html output
10:8923d4ea858b
9:f1076bfb0ed1
b'shian_su'
2014-08-12
Repository metadata is associated with this change set.
- Fixed tool to actually make use of barcode location options - Stored variables now properly used in processHairpinReads function
9:f1076bfb0ed1
8:548802b3492f
b'shian_su'
2014-07-30
Repository metadata is associated with this change set.
Version 1.0.9 - Added R session info to output - Added email for bug reports - Changed edgeR requirement to be stopping condition - Changed names of gene-wise comparison tables to "gene_level" from "roast" - Fixed selection of multiple genes for barcode plotting
8:548802b3492f
7:91e411fcdecc
b'shian_su'
2014-05-02
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Version 1.0.8 - Added differential representation counts table
7:91e411fcdecc
6:3d04308a99f9
b'shian_su'
2014-04-23
Repository metadata is associated with this change set.
- Added differentially expressed hairpin count output - Added running time output - Added counts table output
6:3d04308a99f9
5:17befe9f8b03
b'shian_su'
2014-04-11
Repository metadata is associated with this change set.
Merged branches
5:17befe9f8b03
4:f8af57d6f60b
b'shian_su'
2014-02-24
Fixed bug causing fastq input to break - Moved misplaced error check causing fastq inputs to not function
4:f8af57d6f60b
2:076ca575208f
b'shian_su'
2014-02-24
Deleted selected files
3:17fee0726221
2:076ca575208f
b'shians'
2014-02-20
First commit
2:076ca575208f
1:aa02cf19e1b3
b'shian_su'
2014-02-21
Deleted selected files
1:aa02cf19e1b3
0:28b7bd89e5d3
b'shians'
2014-02-20
Uploaded
0:28b7bd89e5d3
None
b'shians'
2014-02-20