Galaxy |

Changesets

Description: Use latest version of riboplot from PyPI (0.2.4)

Commit: 36:3985e058fd63

Parent: 35:de451be99b93

Commited by: b'Vimalkumar'

Pushed: 2015-11-25

Repository metadata is associated with this change set.

Description: Use latest version of riboplot from PyPI (0.2.3)

Commit: 35:de451be99b93

Parent: 34:1cafe3494b3a

Commited by: b'Vimalkumar'

Pushed: 2015-11-24

Repository metadata is associated with this change set.

Description: Fix: add required repository information in tool_dependencies

Commit: 34:1cafe3494b3a

Parent: 33:42fe64cac818

Commited by: b'Vimalkumar'

Pushed: 2015-10-30

Description: Add bedtools as a dependency for riboplot

Commit: 33:42fe64cac818

Parent: 32:fc2094c0f355

Commited by: b'Vimalkumar'

Pushed: 2015-10-30

Description: Update README (notes on matplotlib)

Commit: 32:fc2094c0f355

Parent: 31:69f43f4144df

Commited by: b'Vimalkumar'

Pushed: 2015-10-30

Description: Use latest version of riboplot from PyPI (0.2.2)

Commit: 31:69f43f4144df

Parent: 30:b26c8f3b5aa6

Commited by: b'Vimalkumar'

Pushed: 2015-10-30

Repository metadata is associated with this change set.

Description: Use latest version of riboplot from PyPI (0.2.1)

Commit: 30:b26c8f3b5aa6

Parent: 29:fb64b970da25

Commited by: b'Vimalkumar'

Pushed: 2015-10-16

Repository metadata is associated with this change set.

Description: Use latest version (0.1.1) from PyPI

Commit: 29:fb64b970da25

Parent: 28:60bbd8ebe314

Commited by: b'Vimalkumar'

Pushed: 2015-09-11

Repository metadata is associated with this change set.

Description: Working install (virtualenv)

Commit: 28:60bbd8ebe314

Parent: 27:99dda3e39997

Commited by: b'Vimalkumar'

Pushed: 2015-09-02

Description: Attempt 4 using virtualenv

Commit: 27:99dda3e39997

Parent: 26:4b1254319802

Commited by: b'Vimalkumar'

Pushed: 2015-09-02

Description: Attempt 3 using virtualenv

Commit: 26:4b1254319802

Parent: 25:80d8e91e8b46

Commited by: b'Vimalkumar'

Pushed: 2015-09-01

Description: Attempt 2 using virtualenv

Commit: 25:80d8e91e8b46

Parent: 24:278d6aef2d7d

Commited by: b'Vimalkumar'

Pushed: 2015-09-01

Description: Attempt using a virtualenv

Commit: 24:278d6aef2d7d

Parent: 23:787ee2d925bb

Commited by: b'Vimalkumar'

Pushed: 2015-09-01

Description: Remove ez_setup from dependencies

Commit: 23:787ee2d925bb

Parent: 22:e623f4daf567

Commited by: b'Vimalkumar'

Pushed: 2015-08-31

Repository metadata is associated with this change set.

Description: Remove interpreter option from wrappers. Update requirements.txt

Commit: 22:e623f4daf567

Parent: 21:3429405e2ce1

Commited by: b'Vimalkumar'

Pushed: 2015-08-31

Description: Add toolshed URL link in tool dependencies

Commit: 21:3429405e2ce1

Parent: 20:a013fc01d8f3

Commited by: b'Vimalkumar'

Pushed: 2015-08-31

Description: Merge

Commit: 20:a013fc01d8f3

Parent: 18:cff63cf0dea8

Commited by: b'Vimalkumar'

Pushed: 2015-08-31

Description: Use packages from the test toolshed. Add bedtools dependency

Commit: 19:6e3b13906b54

Parent: 16:ef39290c19af

Commited by: b'Vimalkumar'

Pushed: 2015-08-28

Repository metadata is associated with this change set.

Description: Update tool_dependencies to install package from pip

Commit: 18:cff63cf0dea8

Parent: 17:805b779d4013

Commited by: b'Vimalkumar'

Pushed: 2015-08-31

Repository metadata is associated with this change set.

Description: Fix tool dependencies

Commit: 17:805b779d4013

Parent: 16:ef39290c19af

Commited by: b'Vimalkumar'

Pushed: 2015-08-31

Description: Replace docs with include directives (rst)

Commit: 16:ef39290c19af

Parent: 15:b78a5ba760b1

Commited by: b'Vimalkumar'

Pushed: 2015-08-27

Description: Update README, add new sample image

Commit: 15:b78a5ba760b1

Parent: 14:628f82e72d72

Commited by: b'Vimalkumar'

Pushed: 2015-08-27

Description: Version as released on PyPI 0.1.0

Commit: 14:628f82e72d72

Parent: 13:8a87a2c44d09

Commited by: b'Vimalkumar'

Pushed: 2015-08-26

Description: Update matplolib changeset

Commit: 13:8a87a2c44d09

Parent: 12:61c47a1d6a7a

Commited by: b'Vimalkumar'

Pushed: 2015-08-21

Description: Add a test to check if a valid FASTA file is used (ribocount)

Commit: 12:61c47a1d6a7a

Parent: 11:7571f5c89090

Commited by: b'Vimalkumar'

Pushed: 2015-08-19

Description: Simple error message now output to HTML. Detailed error goes to standard error. Other changes: * Remove information on time taken (riboplot). * Remove striped table styles (not used. unusable on sorting). * log before re-raising errors.

Commit: 11:7571f5c89090

Parent: 10:8964641b04ef

Commited by: b'Vimalkumar'

Pushed: 2015-08-19

Description: Fix usage link

Commit: 10:8964641b04ef

Parent: 9:e6e9e09eef09

Commited by: b'Vimalkumar'

Pushed: 2015-08-17

Description: Add sample images for ribocount and riboplot

Commit: 9:e6e9e09eef09

Parent: 8:844eb8c36f32

Commited by: b'Vimalkumar'

Pushed: 2015-08-17

Description: Add help section in xml and update usage documentation

Commit: 8:844eb8c36f32

Parent: 7:096c6bbf4a04

Commited by: b'Vimalkumar'

Pushed: 2015-08-17

Description: Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments

Commit: 7:096c6bbf4a04

Parent: 6:2ffa8172dce1

Commited by: b'Vimalkumar'

Pushed: 2015-08-13

Description: Tests for valid RNA Seq bam and warnings when there are no RNA counts

Commit: 6:2ffa8172dce1

Parent: 5:cef780bcce01

Commited by: b'Vimalkumar'

Pushed: 2015-08-12

Description: Remove include directives in rsti (docs). Replaced with links instead

Commit: 5:cef780bcce01

Parent: 4:1901dcdc12ff

Commited by: b'Vimalkumar'

Pushed: 2015-08-12

Description: Move galaxy xml wrappers to top level

Commit: 4:1901dcdc12ff

Parent: 3:8e1efafa6277

Commited by: b'Vimalkumar'

Pushed: 2015-08-12

Description: Updated version * Bugfix: blue lines in some plots (bar colors were not set correctly) * Cookiecutter template * Additional unit tests * Add plot legend

Commit: 3:8e1efafa6277

Parent: 2:b6fd86c539ea

Commited by: b'Vimalkumar'

Pushed: 2015-08-12

Description: Fix pysam version in riboplot (was 0.7.7 instead of 0.8.3). Fix move sys import to the top in ribocount.py, riboplot.py. Minor: * Include an empty conditional when no RNA coverage is required. * Remove output directories after zip file is created.

Commit: 2:b6fd86c539ea

Parent: 1:1e9797878349

Commited by: b'Vimalkumar'

Pushed: 2015-07-02

Description: remove samtools requirement and use updated pysam

Commit: 1:1e9797878349

Parent: 0:ca58e9466cbf

Commited by: b'Vimalkumar'

Pushed: 2015-06-29

Description: First commit

Commit: 0:ca58e9466cbf

Parent: None

Commited by: b'Vimalkumar'

Pushed: 2015-06-29