| Previous changeset 13:1f06dccdc5d1 (2021-06-11) Next changeset 15:7db8d4bc1eea (2021-10-08) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 219f9463094519d9a97c3dfb93f0e1a2233c0243" |
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modified:
macros.xml minimap2.xml |
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| diff -r 1f06dccdc5d1 -r 09b53c1d4ab1 macros.xml --- a/macros.xml Fri Jun 11 21:40:01 2021 +0000 +++ b/macros.xml Fri Jun 25 17:45:36 2021 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">2.20</token> - <token name="@GALAXY_TOOL_VERSION@">galaxy1</token> + <token name="@GALAXY_TOOL_VERSION@">galaxy2</token> <xml name="edam_ontology"> <edam_topics> <edam_topic>topic_0102</edam_topic> |
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| diff -r 1f06dccdc5d1 -r 09b53c1d4ab1 minimap2.xml --- a/minimap2.xml Fri Jun 11 21:40:01 2021 +0000 +++ b/minimap2.xml Fri Jun 25 17:45:36 2021 +0000 |
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| @@ -131,7 +131,7 @@ $io_options.L $io_options.c #if $io_options.cs: - --cs $io_options.cs + --cs=$io_options.cs #end if $io_options.Y #if $io_options.K: @@ -470,6 +470,11 @@ <param name="z" value="400" /> <param name="s" value="40" /> </section> + <section name="io_options"> + <!-- the next setting is a noop for bam output, but tests that + a valid command line is formed for the cs option --> + <param name="cs" value="none" /> + </section> <output name="alignment_output" ftype="bam" file="minimap2-test1-fasta.bam" lines_diff="4" /> </test> <test> |