| Previous changeset 0:ca58e9466cbf (2015-06-29) Next changeset 2:b6fd86c539ea (2015-07-02) |
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Commit message:
remove samtools requirement and use updated pysam |
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modified:
ribocount.xml riboplot.xml tool_dependencies.xml |
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| diff -r ca58e9466cbf -r 1e9797878349 ribocount.xml --- a/ribocount.xml Mon Jun 29 16:38:36 2015 +0100 +++ b/ribocount.xml Mon Jun 29 17:12:15 2015 +0100 |
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| @@ -2,8 +2,7 @@ <description>Get read counts for all transcripts in an alignment (BAM) </description> <requirements> - <requirement type="package" version="0.7.7">pysam</requirement> - <requirement type="package" version="0.1.18">samtools</requirement> + <requirement type="package" version="0.8.3">pysam</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error" /> |
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| diff -r ca58e9466cbf -r 1e9797878349 riboplot.xml --- a/riboplot.xml Mon Jun 29 16:38:36 2015 +0100 +++ b/riboplot.xml Mon Jun 29 17:12:15 2015 +0100 |
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| @@ -4,7 +4,6 @@ <requirements> <requirement type="package" version="1.2.1">matplotlib</requirement> <requirement type="package" version="0.7.7">pysam</requirement> - <requirement type="package" version="0.1.18">samtools</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error" /> |
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| diff -r ca58e9466cbf -r 1e9797878349 tool_dependencies.xml --- a/tool_dependencies.xml Mon Jun 29 16:38:36 2015 +0100 +++ b/tool_dependencies.xml Mon Jun 29 17:12:15 2015 +0100 |
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| @@ -5,13 +5,8 @@ owner="ribogalaxy" prior_installation_required="True" toolshed="http://toolshed.ribogalaxy.ucc.ie" /> </package> - <package name="pysam" version="0.7.7"> - <repository changeset_revision="0e8f87bbc1e8" name="package_pysam_0_7_7" - owner="ribogalaxy" prior_installation_required="True" - toolshed="http://toolshed.ribogalaxy.ucc.ie" /> - </package> - <package name="samtools" version="0.1.18"> - <repository changeset_revision="4407d444b269" name="package_samtools_0_1_18" + <package name="pysam" version="0.8.3"> + <repository changeset_revision="190ad904a112" name="package_pysam_0_8_3" owner="ribogalaxy" prior_installation_required="True" toolshed="http://toolshed.ribogalaxy.ucc.ie" /> </package> |