| Previous changeset 23:787ee2d925bb (2015-08-31) Next changeset 25:80d8e91e8b46 (2015-09-01) |
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Commit message:
Attempt using a virtualenv |
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modified:
tool_dependencies.xml |
| b |
| diff -r 787ee2d925bb -r 278d6aef2d7d tool_dependencies.xml --- a/tool_dependencies.xml Mon Aug 31 16:10:27 2015 +0100 +++ b/tool_dependencies.xml Tue Sep 01 17:00:21 2015 +0100 |
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| @@ -3,18 +3,13 @@ <package name="riboplot" version="0.1.0"> <install version="1.0"> <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/r/riboplot/riboplot-0.1.0.tar.gz</action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR</environment_variable> + <action type="setup_virtualenv"> + <package>https://pypi.python.org/packages/source/r/riboplot/riboplot-0.1.0.tar.gz#md5=047c7af90f7dbb1638158810a2960174</package> </action> </actions> </install> <readme> - Requires installation of matplotlib 1.3.1 and pysam 0.8.3. RNA coverage requires bedtools installed. + Note: RNA coverage requires bedtools installed. </readme> </package> </tool_dependency> |