| Previous changeset 14:eaee459f3d69 (2018-03-28) Next changeset 16:bf68eb663bc3 (2020-01-19) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit f64c36610e6ca2240e4d745a5708d0d02ba4a16d" |
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modified:
prokka.xml |
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| diff -r eaee459f3d69 -r 3a0bd09a41dd prokka.xml --- a/prokka.xml Wed Mar 28 12:38:42 2018 -0400 +++ b/prokka.xml Mon Dec 02 08:01:42 2019 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="prokka" name="Prokka" version="1.13"> +<tool id="prokka" name="Prokka" version="1.13+galaxy1"> <description>Prokaryotic genome annotation</description> <requirements> <requirement type="package" version="1.13">prokka</requirement> @@ -183,15 +183,25 @@ <param name="input" ftype="fasta" value="phiX174.fasta" /> <param name="outputs" value="gff,gbk,fna,faa,ffn,sqn,fsa,tbl,tsv,err,txt" /> <output name="out_gff" file="out.gff" /> - <output name="out_gbk" file="out.gbk" lines_diff="14" /> + <output name="out_gbk" > + <assert_contents> + <has_text_matching expression="LOCUS" /> + <has_text_matching expression="//" /> + </assert_contents> + </output> <output name="out_fna" file="out.fna" /> <output name="out_faa" file="out.faa" /> <output name="out_ffn" file="out.ffn" /> - <output name="out_sqn" file="out.sqn" lines_diff="84" /> + <output name="out_sqn" > + <assert_contents> + <has_text_matching expression="Seq-entry" /> + <has_text_matching expression="contig2" /> + </assert_contents> + </output> <output name="out_fsa" file="out.fsa" /> <output name="out_tbl" file="out.tbl" /> <output name="out_tsv" file="out.tsv" /> - <output name="out_err" file="out.err" /> + <output name="out_err" file="out.err" lines_diff="14" /> <output name="out_txt" file="out.txt" /> <output name="out_log"> <assert_contents> |